nextstrain/nextclade: 2.0.0-alpha.10

⚠️ This is a pre-release. It can contain bugs and significant changes which are not yet finalized. Changes may appear without notice. We recommend to try the pre-releases to learn about upcoming features. For important projects, use stable releases. Commit history (click to expand) - [[`76aff10`](https://github.com/nextstrain/nextclade/commit/76aff1086846202929eb70ef2ddfa05a11536561)] feat(gff): accept locus_tag and gene in addition, warn if neither locus_tag nor gene_name present - [[`817bede`](https://github.com/nextstrain/nextclade/commit/817bede4a9530f595407bf2563d16fad420c3576)] feat(cli): make nextalign require one of the output flags - [[`bb9e9b3`](https://github.com/nextstrain/nextclade/commit/bb9e9b3a299e9841939ca069f987dc86e2cf1848)] feat(cli): add --output-all, --output-translations and redesign Nextalign cli args - [[`b22ce3f`](https://github.com/nextstrain/nextclade/commit/b22ce3f037f84516dd0e1fa2d6e8213a5ab64814)] feat(cli): add --output-all, --output-translations and redesign Nextalign cli args - [[`aa72b65`](https://github.com/nextstrain/nextclade/commit/aa72b652643fe8166f989a577e541652171cbe7e)] fix: correctly extract base name from path - [[`071c8c8`](https://github.com/nextstrain/nextclade/commit/071c8c87cb36ad0dbe54f85eb6fd4bf65837ec41)] feat(cli): clarify cli arg descriptions - [[`431b7d9`](https://github.com/nextstrain/nextclade/commit/431b7d9059c4e776e64a41924c59bce75390ffc1)] feat(cli): add list of required output flags to the cli args decriptions - [[`b9f95f7`](https://github.com/nextstrain/nextclade/commit/b9f95f71533d84fd4c6a324b015a7fb70f56dcd0)] feat(web): upload multiple files - [[`0e8ace2`](https://github.com/nextstrain/nextclade/commit/0e8ace2fd2f550b92d6d43ce88a2289231699810)] feat(web): adjust upload box text - multiple files - [[`656a465`](https://github.com/nextstrain/nextclade/commit/656a4656994b660d43463350bae7d1ac8dc9ecc4)] feat(cli): support compressed fasta files - [[`a739125`](https://github.com/nextstrain/nextclade/commit/a739125d67a03f36f2e699194e5daaf7fa44f675)] fix: ignore case when guessing compression from file extension - [[`ee28ee8`](https://github.com/nextstrain/nextclade/commit/ee28ee895a3bb1b0d0cd106c8eef00d0bd95be95)] fix: disable `bzip2`, `xz2` and `zstd` for wasm These crates cannot be built for `wasm32-unknown-unknown` target, hence disabling - [[`33d1819`](https://github.com/nextstrain/nextclade/commit/33d181989d05e05eb75f0fb86eb89124c0133814)] Merge remote-tracking branch 'origin/master' into feat/web-upload-multiple-files - [[`77964d8`](https://github.com/nextstrain/nextclade/commit/77964d85f2c5af707303206c02b8f9f934cadfa2)] Merge remote-tracking branch 'origin/master' into feat/compression - [[`869a56f`](https://github.com/nextstrain/nextclade/commit/869a56f6d4b9ac91961c57014bfef48c516ca411)] Merge pull request #819 from nextstrain/feat-accept-locus-tag-in-gff - [[`1c0c43c`](https://github.com/nextstrain/nextclade/commit/1c0c43c852e4b2103ea643e2d9b3068bf8bcd7bf)] Merge pull request #843 from nextstrain/feat/cli-v2 - [[`4be720e`](https://github.com/nextstrain/nextclade/commit/4be720ece3019d73078ac12d81ad7028e38f4a7c)] Merge remote-tracking branch 'origin/master' into feat/compression - [[`8e3c64e`](https://github.com/nextstrain/nextclade/commit/8e3c64eb64801b4c090b7cc565c4f0e1e922dfe8)] Merge remote-tracking branch 'origin/master' into feat/web-upload-multiple-files - [[`145009a`](https://github.com/nextstrain/nextclade/commit/145009ad1b83e46297c1ffce3fed25d489a38fe3)] chore(ci): set data server in cli dependeing on version and branch - [[`3dec0cc`](https://github.com/nextstrain/nextclade/commit/3dec0ccb057fcd92706a12bf73d0560b1019929a)] chore: release cli 2.0.0-alpha.10 - [[`b5b0cf1`](https://github.com/nextstrain/nextclade/commit/b5b0cf1bb9d3bc1a09813d7c8edae590442fa036)] Merge pull request #846 from nextstrain/feat/web-upload-multiple-files - [[`58241d2`](https://github.com/nextstrain/nextclade/commit/58241d20a207c7a23ac3c192e007b947c49c72a5)] Merge pull request #847 from nextstrain/feat/compression - [[`fd76ee9`](https://github.com/nextstrain/nextclade/commit/fd76ee9107a28f2688e9b0f764ecbd9fdf97f2f2)] chore(ci): fix missing var