nextstrain/nextclade: 2.0.0-alpha.11

⚠️ This is a pre-release. It can contain bugs and significant changes which are not yet finalized. Changes may appear without notice. We recommend to try the pre-releases to learn about upcoming features. For important projects, use stable releases. Commit history (click to expand) - [[`2492358`](https://github.com/nextstrain/nextclade/commit/249235828bc9beb1ab4895e612a3e9ac8c43c7b0)] docs: start changelog for v2 - [[`4a658fa`](https://github.com/nextstrain/nextclade/commit/4a658faf0e58de4df3a484bd958386948ecf3529)] chore: CHANGELOG for striped alignment - [[`b509ae8`](https://github.com/nextstrain/nextclade/commit/b509ae81aa978ca3a9ce9ef337c8c40d2304f3e6)] Merge remote-tracking branch 'origin/master' into docs/changelog-v2 - [[`11ce301`](https://github.com/nextstrain/nextclade/commit/11ce301bf5cab2764c1c3071441728977a8d78d1)] Merge remote-tracking branch 'origin/master' into docs/changelog-v2 - [[`c0e951b`](https://github.com/nextstrain/nextclade/commit/c0e951b563e6774a7d86c7cebec552fe38f258b8)] docs: add to changelog - [[`38b9478`](https://github.com/nextstrain/nextclade/commit/38b947821993f06e79e90f5f4683122fbd86f49a)] Merge remote-tracking branch 'origin/master' into docs/changelog-v2 - [[`59800e3`](https://github.com/nextstrain/nextclade/commit/59800e3d70d81070e8ffa226cf7f7f67b40d783d)] Merge remote-tracking branch 'origin/master' into docs/changelog-v2 - [[`46bc271`](https://github.com/nextstrain/nextclade/commit/46bc27127fc940f0d3525d6605960bc9e114bf18)] docs: add more items to the changelog - [[`c246815`](https://github.com/nextstrain/nextclade/commit/c246815f83b96bbf85659df49f2ff5635d170502)] Merge branch 'docs/changelog-v2' - [[`a5e1718`](https://github.com/nextstrain/nextclade/commit/a5e171890b6c098dd7ad14992e3903c61ca5469e)] chore: pre-release web v2.0.0 - [[`e4f839a`](https://github.com/nextstrain/nextclade/commit/e4f839acf3889b33b194096f0133b719a90edd89)] chore: fix release commit message [skip ci] - [[`f5e270e`](https://github.com/nextstrain/nextclade/commit/f5e270eb70ca92118f312b4219f303e47740c30f)] chore: update lockfile [skip ci] - [[`da85e65`](https://github.com/nextstrain/nextclade/commit/da85e65dc12f493896cccb32d609403101777fdf)] chore: remove pre-release commit message [skip ci] Just release always, because we cannot really distinguish web pre-releases from branch. They all start from master and then gradually promoted to staging and release. - [[`540255e`](https://github.com/nextstrain/nextclade/commit/540255e41011ec8a879ccd7e63913de2d1366e06)] chore(ci): trigger ci - [[`2e546a4`](https://github.com/nextstrain/nextclade/commit/2e546a44bc0d84705fa6a1dc6dea4b69477b25d1)] fix(cli): correctly find base name in cases like .fasta.gz This allows to strip not only `.fasta`, but also `.fasta.gz` and similar, when deducing file base name which is used for creating output file names. - [[`9fb1042`](https://github.com/nextstrain/nextclade/commit/9fb104217f943daa2d6035c0803af45e0d41908f)] Merge pull request #854 from nextstrain/fix/cli-basename - [[`c739833`](https://github.com/nextstrain/nextclade/commit/c739833638c71a784a4252d63b17c18dd6e86d52)] fix(cli): prevent writing duplicate csv row Some of the CLI CSV and TSV files had two header rows due to an extra function call - [[`e31dcd3`](https://github.com/nextstrain/nextclade/commit/e31dcd3aa22e6ffd662686535d240f7728f7c445)] Merge pull request #855 from nextstrain/fix/cli-duplicated-csv-headers - [[`3a404ca`](https://github.com/nextstrain/nextclade/commit/3a404ca2429b819630714e336f997f8a2ce5d6bb)] chore: release cli 2.0.0-alpha.11