Bugfixes Bug in statistical inefficiency computation where self.max_n_iterations wasn't being used was fixed (#577). Bug in estimated performance in realtime yaml file fixed by iterating through all MCMC moves (#578) Potential bug fixed by explicitly updating and broadcasting thermodynamic states in replicas, when used in an MPI (distributed) context. Issue #579 (#587). Bug in handling unsampled states in realtime/offline analysis fixed by using MultiStateSampler._unsampled_states to build the mbar estimate array. Issue #592 (#593) Enhancements DHFR test system does not require parmed as dependency, since OpenMM can now handle prmtop/inpcrd files. Issue #539 (#588). MultiStateSamplerAnalyzer now allows to manually specify n_equilibrium...
0.18.1 - Bugfix release This is a minor bugfix release. New features Improvements for HostGuest* cl...
This release fixes several bugs and eliminates cython compiled acceleration of replica-exchange all-...
Fixed bug in MultiExperimentAnalyzer where a path ending in the folder separator (e.g. /) caused all...
What's changed Changed behaviors LangevinDynamicsMove now uses openmm.LangevinMiddleIntegrator (a B...
What's Changed Bugfixes Bug in replica mixing in MPI multi-GPU runs--where some replicas were simul...
Bugfixes Fixed a bug in multistateanalyzer.py where a function was imported from openmmtools.utils ...
This release includes the following features: Storage Interface module with automatic disk IO handl...
0.23.0 - latest numba support and real time stats enhancements Please note that there is an API brea...
New features Added support in AbsoluteAlchemicalFactory for handling multiple independent alchemica...
Enhancements and features Added RMSD Type restraint, requires OpenMM 7.3 or greater to access. You ...
This is a patch release containing the following bug fixes: 2222 (Improved logic for matching multi-...
New features Add GlobalParameterFunction that allows to enslave a GlobalParameter to an arbitrary f...
Bug fixes Fixed bug when sampling chains in parallel without multiprocess installed introduced in v...
API-breaking changes The yank.mpi module and the objects in the yank.multistate package, which were...
Fix analysis on 32-bit platforms OS agnostic More robust analysis tests Pin Cerberus to 1.1 as 1.2 b...
0.18.1 - Bugfix release This is a minor bugfix release. New features Improvements for HostGuest* cl...
This release fixes several bugs and eliminates cython compiled acceleration of replica-exchange all-...
Fixed bug in MultiExperimentAnalyzer where a path ending in the folder separator (e.g. /) caused all...
What's changed Changed behaviors LangevinDynamicsMove now uses openmm.LangevinMiddleIntegrator (a B...
What's Changed Bugfixes Bug in replica mixing in MPI multi-GPU runs--where some replicas were simul...
Bugfixes Fixed a bug in multistateanalyzer.py where a function was imported from openmmtools.utils ...
This release includes the following features: Storage Interface module with automatic disk IO handl...
0.23.0 - latest numba support and real time stats enhancements Please note that there is an API brea...
New features Added support in AbsoluteAlchemicalFactory for handling multiple independent alchemica...
Enhancements and features Added RMSD Type restraint, requires OpenMM 7.3 or greater to access. You ...
This is a patch release containing the following bug fixes: 2222 (Improved logic for matching multi-...
New features Add GlobalParameterFunction that allows to enslave a GlobalParameter to an arbitrary f...
Bug fixes Fixed bug when sampling chains in parallel without multiprocess installed introduced in v...
API-breaking changes The yank.mpi module and the objects in the yank.multistate package, which were...
Fix analysis on 32-bit platforms OS agnostic More robust analysis tests Pin Cerberus to 1.1 as 1.2 b...
0.18.1 - Bugfix release This is a minor bugfix release. New features Improvements for HostGuest* cl...
This release fixes several bugs and eliminates cython compiled acceleration of replica-exchange all-...
Fixed bug in MultiExperimentAnalyzer where a path ending in the folder separator (e.g. /) caused all...