A nextflow pipeline to process spatial and single-cell data for Vitessce
- Li, Tong
- Horsfall, Dave
- Basurto Lozada, Daniela
Publication date
December 2022
DOIAbstract
Initial release 0.1.0 to setup external automation.If you use this repo, please cite i
Initial release 0.1.0 to setup external automation.If you use this repo, please cite i
Spatially Resolved Transcriptomics Exploration in Virtual Reality – Python pipeline </p
Bioinformatics workflow for detecting viruses and viroids from host plant small RNA sequencing data....
A tool for extracting time-series data from video footage of microfluidic devices with complex chann...
<p>Nextflow is a data-driven framework for computational pipelines that simplifies writing parallel ...
Nextflow is an open-source workflow management system that prioritizes portability and reproducibili...
An automated Nextflow pipeline for RNA-seq dataIf you use this software, please cite it using the me...
This folder contains the data and scripts to recreate the simulations of within and among-population...
What's Changed data conversion pipeline using nextflow by @BioinfoTongLI in https://github.com/hani...
Steps of the pipeline are displayed in rows with the data consumed in the left column, the method us...
This version marks the change from Nextflow DSL 1 to Nextflow DSL 2. This change will make it easie...
A CWL pipeline for processing spatial transcriptomics data. The latest stable version of this pipel...
Data and code for: Guo et al., Single-cell virology: on-chip investigation of viral infection dynami...
Data flow from satellite sickle cell clinics to the data and biorepository section.</p
This is the version of the spatialLIBD project at the state that we submitted it to Bioconductor for...
The methods, pipelines, and data used for the examples shown in the Vectools manuscript.</p
Spatially Resolved Transcriptomics Exploration in Virtual Reality – Python pipeline </p
Bioinformatics workflow for detecting viruses and viroids from host plant small RNA sequencing data....
A tool for extracting time-series data from video footage of microfluidic devices with complex chann...
<p>Nextflow is a data-driven framework for computational pipelines that simplifies writing parallel ...
Nextflow is an open-source workflow management system that prioritizes portability and reproducibili...
An automated Nextflow pipeline for RNA-seq dataIf you use this software, please cite it using the me...
This folder contains the data and scripts to recreate the simulations of within and among-population...
What's Changed data conversion pipeline using nextflow by @BioinfoTongLI in https://github.com/hani...
Steps of the pipeline are displayed in rows with the data consumed in the left column, the method us...
This version marks the change from Nextflow DSL 1 to Nextflow DSL 2. This change will make it easie...
A CWL pipeline for processing spatial transcriptomics data. The latest stable version of this pipel...
Data and code for: Guo et al., Single-cell virology: on-chip investigation of viral infection dynami...
Data flow from satellite sickle cell clinics to the data and biorepository section.</p
This is the version of the spatialLIBD project at the state that we submitted it to Bioconductor for...
The methods, pipelines, and data used for the examples shown in the Vectools manuscript.</p
Spatially Resolved Transcriptomics Exploration in Virtual Reality – Python pipeline </p
Bioinformatics workflow for detecting viruses and viroids from host plant small RNA sequencing data....
A tool for extracting time-series data from video footage of microfluidic devices with complex chann...
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