Changed: improve handling of possible feature table IDs [#846] Fixed: genome feature annotation transfer: corrected fuzzy position operator for clipped features at 3' end of positive strand [#847] Added/upgraded: picard 2.17.6 -> 2.18.9 (to avoid OOM errors when demultiplexing NovaSeq runs
What's Changed Minor functional updates CDC contractual updates to sarscov2_illumina_full (min cove...
What's Changed post CDC contract: genome ID renaming by @dpark01 in #408 Full Changelog: https://g...
What's Changed lofreq task portability, misc other edits by @dpark01 in #426 Full Changelog: https...
New: Changed: in WDL workflows, default demultiplexing parameters to support novaseq [#868] in illu...
Fixed: fix position output for genome features falling oob during annotation in snakemake pipeline:...
New: WDL workflow added to read_utils.wdl::downsample() [#819, #821, #823] WDL workflows added for ...
New: [Nothing] Fixed: the conda channel order has been corrected to reflect the bioconda-preferre...
New: Improvements to the pipeline to support single-end reads in additional stages, including the d...
Fixed: Fix issues related to Trinity on certain environments (#900) allow for flexibility in gatk v...
Fixed: CheckIlluminaDirectory now creates symlinks only if necessary Fix plot_coverage for cases wh...
What's Changed Feature changes CDC SC2 viral pipeline updates (parameters, reporting, QC) by @dpark...
New: scaffolder uses ambiguous alignments when no unambiguous ones exist (#904) add function to ass...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
This is a release with many changes, including new WDL pipelines, a distribution of viral-ngs on DNA...
Changed: Demultiplexing from Illumina basecalls is now more permissive of varying input directory [...
What's Changed Minor functional updates CDC contractual updates to sarscov2_illumina_full (min cove...
What's Changed post CDC contract: genome ID renaming by @dpark01 in #408 Full Changelog: https://g...
What's Changed lofreq task portability, misc other edits by @dpark01 in #426 Full Changelog: https...
New: Changed: in WDL workflows, default demultiplexing parameters to support novaseq [#868] in illu...
Fixed: fix position output for genome features falling oob during annotation in snakemake pipeline:...
New: WDL workflow added to read_utils.wdl::downsample() [#819, #821, #823] WDL workflows added for ...
New: [Nothing] Fixed: the conda channel order has been corrected to reflect the bioconda-preferre...
New: Improvements to the pipeline to support single-end reads in additional stages, including the d...
Fixed: Fix issues related to Trinity on certain environments (#900) allow for flexibility in gatk v...
Fixed: CheckIlluminaDirectory now creates symlinks only if necessary Fix plot_coverage for cases wh...
What's Changed Feature changes CDC SC2 viral pipeline updates (parameters, reporting, QC) by @dpark...
New: scaffolder uses ambiguous alignments when no unambiguous ones exist (#904) add function to ass...
A set of scripts and tools for the analysis of viral NGS data. More detailed documentation can be f...
This is a release with many changes, including new WDL pipelines, a distribution of viral-ngs on DNA...
Changed: Demultiplexing from Illumina basecalls is now more permissive of varying input directory [...
What's Changed Minor functional updates CDC contractual updates to sarscov2_illumina_full (min cove...
What's Changed post CDC contract: genome ID renaming by @dpark01 in #408 Full Changelog: https://g...
What's Changed lofreq task portability, misc other edits by @dpark01 in #426 Full Changelog: https...
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