Publication date
August 2023
DOIAbstract
These files include the assembly itself (fasta format), as well as the Pac-Bio subreads, which have been mapped back to the assembly
These files include the assembly itself (fasta format), as well as the Pac-Bio subreads, which have been mapped back to the assembly
<p>These are the raw reads from our sequencing of Candidatus Ruthia magnifica. We performed a co-as...
Nucleotide and amino acid fasta format reference files, and associated mapping text files; zipped
Assembly from multiple assemble procedure, read fastq files can be downloaded from NCBI SRA center b...
This file contains two assembly files; contig_sequences.fa is a fasta formatted file of contig seque...
This script will map .fastq reads to a .fasta assembly file and generate a tab-delimited table of co...
Fasta file containing the raw assembled sequences (singletons eliminated). For each sequence the co...
This file contains the raw, de novo assembly produced from the unmapped reads using Trinity. There a...
These files contain the basecalled reads (FASTQ or FASTA format) for each of the test read sets used...
Assembly in fasta format of white-footed mouse 454 cDNA libraries from in and around New York City (...
These are the original transcriptome assembly files prior to the filtering and ORF prediction descri...
This file holds all transcript assemblies generated through the trinity package (version 2012-01-25)...
contains the output of the mapping assembly of the normalized cDNA reads against the ENSEMBL transcr...
We downloaded raw PacBio reads from ftp://ftp.hgsc.bcm.edu/Dpseudoobscura/Towards_finishing_the_D.ps...
These are FASTA files containing the raw output of the Trinity RNA-Seq de novo assembler for the cDN...
RNA seq raw reads, cufflinks output, and deduplicated bam file, mapped to the Pac-Bio CP genom
<p>These are the raw reads from our sequencing of Candidatus Ruthia magnifica. We performed a co-as...
Nucleotide and amino acid fasta format reference files, and associated mapping text files; zipped
Assembly from multiple assemble procedure, read fastq files can be downloaded from NCBI SRA center b...
This file contains two assembly files; contig_sequences.fa is a fasta formatted file of contig seque...
This script will map .fastq reads to a .fasta assembly file and generate a tab-delimited table of co...
Fasta file containing the raw assembled sequences (singletons eliminated). For each sequence the co...
This file contains the raw, de novo assembly produced from the unmapped reads using Trinity. There a...
These files contain the basecalled reads (FASTQ or FASTA format) for each of the test read sets used...
Assembly in fasta format of white-footed mouse 454 cDNA libraries from in and around New York City (...
These are the original transcriptome assembly files prior to the filtering and ORF prediction descri...
This file holds all transcript assemblies generated through the trinity package (version 2012-01-25)...
contains the output of the mapping assembly of the normalized cDNA reads against the ENSEMBL transcr...
We downloaded raw PacBio reads from ftp://ftp.hgsc.bcm.edu/Dpseudoobscura/Towards_finishing_the_D.ps...
These are FASTA files containing the raw output of the Trinity RNA-Seq de novo assembler for the cDN...
RNA seq raw reads, cufflinks output, and deduplicated bam file, mapped to the Pac-Bio CP genom
<p>These are the raw reads from our sequencing of Candidatus Ruthia magnifica. We performed a co-as...
Nucleotide and amino acid fasta format reference files, and associated mapping text files; zipped
Assembly from multiple assemble procedure, read fastq files can be downloaded from NCBI SRA center b...
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