This script will map .fastq reads to a .fasta assembly file and generate a tab-delimited table of counts of reads that mapped back to each Trinity subcomponent. See comments for usage, and if script is modified, please provide proper attribution
This file contains two assembly files; contig_sequences.fa is a fasta formatted file of contig seque...
This file holds all transcript assemblies generated through the trinity package (version 2012-01-25)...
Sequence alignment file of fastq files from Central Park 454 sequencing. Fastq Files were aligned t...
This bash script will concatenated, digitally normalize, and assemble (via Trinity) paired end .fast...
This script will generate summary statistics from an assembled Trinity fasta file. See comments for ...
These files include the assembly itself (fasta format), as well as the Pac-Bio subreads, which have ...
This script will generate a Trinotate annotation compressed file for a .fasta Trinity assembly. See ...
These are FASTA files containing the raw output of the Trinity RNA-Seq de novo assembler for the cDN...
Trinity generated assembly of all four individuals pooled together in a gzipped fasta format
Assembly from multiple assemble procedure, read fastq files can be downloaded from NCBI SRA center b...
This is a fasta format file containing all mRNA contigs for Heliconius sara. The assembly was perfor...
contains the output of the mapping assembly of the normalized cDNA reads against the ENSEMBL transcr...
This script accesses a directory, and traverses all FASTA files in it, recording the names of all ta...
A genome read data set can be quickly and efficiently remapped from one reference to another similar...
Fasta file containing the raw assembled sequences (singletons eliminated). For each sequence the co...
This file contains two assembly files; contig_sequences.fa is a fasta formatted file of contig seque...
This file holds all transcript assemblies generated through the trinity package (version 2012-01-25)...
Sequence alignment file of fastq files from Central Park 454 sequencing. Fastq Files were aligned t...
This bash script will concatenated, digitally normalize, and assemble (via Trinity) paired end .fast...
This script will generate summary statistics from an assembled Trinity fasta file. See comments for ...
These files include the assembly itself (fasta format), as well as the Pac-Bio subreads, which have ...
This script will generate a Trinotate annotation compressed file for a .fasta Trinity assembly. See ...
These are FASTA files containing the raw output of the Trinity RNA-Seq de novo assembler for the cDN...
Trinity generated assembly of all four individuals pooled together in a gzipped fasta format
Assembly from multiple assemble procedure, read fastq files can be downloaded from NCBI SRA center b...
This is a fasta format file containing all mRNA contigs for Heliconius sara. The assembly was perfor...
contains the output of the mapping assembly of the normalized cDNA reads against the ENSEMBL transcr...
This script accesses a directory, and traverses all FASTA files in it, recording the names of all ta...
A genome read data set can be quickly and efficiently remapped from one reference to another similar...
Fasta file containing the raw assembled sequences (singletons eliminated). For each sequence the co...
This file contains two assembly files; contig_sequences.fa is a fasta formatted file of contig seque...
This file holds all transcript assemblies generated through the trinity package (version 2012-01-25)...
Sequence alignment file of fastq files from Central Park 454 sequencing. Fastq Files were aligned t...
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