Added #63 Replace local bcl_demultiplex subworkflow with nf-core version (@matthdsm) #63 Add bases_demultiplex local subworkflow (@matthdsm) #63 Replace fastqc with falco for speedier QC, fixes Replace fastqc with falco #62 (@matthdsm) #64 Add subway map by @nvnieuwk #70 Make tools and trimming optional (@matthdsm) #71 Add nf-test (@emiller88) Changed #78 Nextflow minimal version is now 22.10.1 Fixed #63 Fix MultiQC report inputs, fixes MultiQC report is empty (@matthdsm) #67 Enable institutional configs (@emiller88) #83 Fix skip_tools (@glichtenstein) #80 When NoLaneSplitting is true the process fails because of a glob. See nf-core/modules #2745. (@matthdsm) #79 Update link in docs to samplesheet (@glichtenstein & @emiller88
Added [#94] - Added a second BEDTools intersect step to allow filtering and overlapping in the same...
Added Fixed #882 Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to...
Added DSL2 conversion [#28] - Added DRAGMAP alignment [#64] - Added CHM13 igenomes config [#39...
Added #63 Replace local bcl_demultiplex subworkflow with nf-core version (@matthdsm) #63 Add bases_...
Enhancements DSL1 to DSL2 conversion Different processes based on a unique step in the pipeline Inc...
Added #687 - Adds Kraken2 unique kmer counting report #676 - Refactor help message / summary messag...
[3.1] - 2023-03-10 Major Changes IgG controls will now be analysed by the deeptools QC subworkflow ...
Pipeline Updates ⚙️ Dramatically increase the default process time config requests for Bismark and ...
Major enhancements Add DNA variant calling functionality Add RNA modification and fusion detection ...
What's Changed Fix typo causing empty version imformation for mtx_conversion subworkflow (#254) Add...
[2.1] - 2021-06-15 Enhancements & fixes Removed workflow to download data from public databases in ...
What's Changed Sgdemux dev by @sam-white04 in https://github.com/nf-core/demultiplex/pull/91 Update...
Pipeline Updates Major pipeline rewrite to use DSL2 with shared nf-core/modules. Warning: Breaking c...
New features Added multicore support for TrimGalore! Improved the multicore support for Bismark met...
This is a patch release fixing some nasty bugs that crept into the code base for the nf-core helper ...
Added [#94] - Added a second BEDTools intersect step to allow filtering and overlapping in the same...
Added Fixed #882 Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to...
Added DSL2 conversion [#28] - Added DRAGMAP alignment [#64] - Added CHM13 igenomes config [#39...
Added #63 Replace local bcl_demultiplex subworkflow with nf-core version (@matthdsm) #63 Add bases_...
Enhancements DSL1 to DSL2 conversion Different processes based on a unique step in the pipeline Inc...
Added #687 - Adds Kraken2 unique kmer counting report #676 - Refactor help message / summary messag...
[3.1] - 2023-03-10 Major Changes IgG controls will now be analysed by the deeptools QC subworkflow ...
Pipeline Updates ⚙️ Dramatically increase the default process time config requests for Bismark and ...
Major enhancements Add DNA variant calling functionality Add RNA modification and fusion detection ...
What's Changed Fix typo causing empty version imformation for mtx_conversion subworkflow (#254) Add...
[2.1] - 2021-06-15 Enhancements & fixes Removed workflow to download data from public databases in ...
What's Changed Sgdemux dev by @sam-white04 in https://github.com/nf-core/demultiplex/pull/91 Update...
Pipeline Updates Major pipeline rewrite to use DSL2 with shared nf-core/modules. Warning: Breaking c...
New features Added multicore support for TrimGalore! Improved the multicore support for Bismark met...
This is a patch release fixing some nasty bugs that crept into the code base for the nf-core helper ...
Added [#94] - Added a second BEDTools intersect step to allow filtering and overlapping in the same...
Added Fixed #882 Define DSL1 execution explicitly, as new versions Nextflow made DSL2 default (♥ to...
Added DSL2 conversion [#28] - Added DRAGMAP alignment [#64] - Added CHM13 igenomes config [#39...