These are the RData objects of the processed cfMeDIP data that were used to run the machine learning analyses in "Sensitive tumour detection and classification using plasma cell-free DNA methylomes", Nature, 2018. This archive also includes the models we generated, and training and validation data matrices that people can use to fit new models and evaluate performance. These objects are to be used with the scripts and markdown at doi: 10.5281/zenodo.1242697 . The ReadMe contains descriptions
The FlowSorted.Blood.450k package contains publicly available Illumina HumanMethyla-tion450 (“450k”)...
Multimodal predictor and outcome data used to train machine learning models to predict future tau ac...
This upload contains cellranger count outputs and RDS objects of preprocessed scRNAseq data from the...
Contains raw markdowns and knit markdown with plots for machine learning analyses in Shen et al, "Hi...
The R Markdown MLMarkdown_Final_withImages.Rmd contains all the machine learning code run for our cf...
Seurat object & markers for each cluster (stored in .RData), and relevant meta data( including cell ...
Metastatic cancers account for up to 90% of cancer-related deaths. The clear differentiation of meta...
Thesis (M.S.)--Wichita State University, College of Engineering, Dept. of Electrical Engineering and...
Data for Pan-cancer classification of single cells in the tumour microenvironment. Most files are s...
The FlowSorted.DLPFC.450k package contains publicly available Illumina HumanMethyla-tion450 (“450k”)...
Code, figures, and data for analyses outlined in "Inferring cancer evolution from single tumour biop...
These are intermediate data files for the paperLobo AK, Traeger LL, Keller MP, Attie AD, Rey FE, Bro...
Contains MethylCIBERSORT estimates for TCGA tumours, previously published in Chakravarthy et al, Nat...
A. Clustering of tumor samples by shared methylation patterns of the sites included in the prostate ...
Abstract DNA methylation (DNAm) alterations have been heavily implicated in carcinogenesis and the p...
The FlowSorted.Blood.450k package contains publicly available Illumina HumanMethyla-tion450 (“450k”)...
Multimodal predictor and outcome data used to train machine learning models to predict future tau ac...
This upload contains cellranger count outputs and RDS objects of preprocessed scRNAseq data from the...
Contains raw markdowns and knit markdown with plots for machine learning analyses in Shen et al, "Hi...
The R Markdown MLMarkdown_Final_withImages.Rmd contains all the machine learning code run for our cf...
Seurat object & markers for each cluster (stored in .RData), and relevant meta data( including cell ...
Metastatic cancers account for up to 90% of cancer-related deaths. The clear differentiation of meta...
Thesis (M.S.)--Wichita State University, College of Engineering, Dept. of Electrical Engineering and...
Data for Pan-cancer classification of single cells in the tumour microenvironment. Most files are s...
The FlowSorted.DLPFC.450k package contains publicly available Illumina HumanMethyla-tion450 (“450k”)...
Code, figures, and data for analyses outlined in "Inferring cancer evolution from single tumour biop...
These are intermediate data files for the paperLobo AK, Traeger LL, Keller MP, Attie AD, Rey FE, Bro...
Contains MethylCIBERSORT estimates for TCGA tumours, previously published in Chakravarthy et al, Nat...
A. Clustering of tumor samples by shared methylation patterns of the sites included in the prostate ...
Abstract DNA methylation (DNAm) alterations have been heavily implicated in carcinogenesis and the p...
The FlowSorted.Blood.450k package contains publicly available Illumina HumanMethyla-tion450 (“450k”)...
Multimodal predictor and outcome data used to train machine learning models to predict future tau ac...
This upload contains cellranger count outputs and RDS objects of preprocessed scRNAseq data from the...