Publication date
August 2023
DOIAbstract
BC.Rdata: Seurat Object ST_expr_smooth_out.RData: Pre-computed smooths spatial transcriptomics gene expression using the weighted mean of neighbouring spots in one compartment
BC.Rdata: Seurat Object ST_expr_smooth_out.RData: Pre-computed smooths spatial transcriptomics gene expression using the weighted mean of neighbouring spots in one compartment
Interactive 3D plotting for Seurat objects Works for tSNE and UMAP embeddings Maps gene expressi...
Seurat (2.3.4) object. Subcluster analysis for ectodermal epithelial cells. The analysis that result...
This repo contains processed data to reproduce results in the paper "SpotClean adjusts for spot swap...
Preprocessed datasets to reproduce figures for the manuscript "Alignment and Integration of Spatial ...
Seurat object and markers for each cluster(stored in .RData) and relevant metadata(including cell ba...
Seurat object & markers for each cluster (stored in .RData), and relevant meta data( including cell ...
Spatially Resolved Transcriptomics Exploration in Virtual Reality – Python pipeline </p
BackgroundSpatial transcriptomics (STs) simultaneously obtains the location and amount of gene expre...
TWAS weights files from three human spinal cord segments, created with FUSION. Each file consists o...
This is the PLIER model based on all human samples from recount2 database (https://jhubiostatistics....
This release is linked to the article "3-dimensional molecular cartography of human cerebral organoi...
BackgroundSpatial transcriptomics (STs) simultaneously obtains the location and amount of gene expre...
This dataset contains the raw files, results files and R workspace files (.RData) associated with th...
Code necessary to reproduce the analyses presented in the manuscript: Celloscope: a probabilistic mo...
<p>(A) Bootstrap analysis of regularized-log transformed counts to assign confidence levels to sampl...
Interactive 3D plotting for Seurat objects Works for tSNE and UMAP embeddings Maps gene expressi...
Seurat (2.3.4) object. Subcluster analysis for ectodermal epithelial cells. The analysis that result...
This repo contains processed data to reproduce results in the paper "SpotClean adjusts for spot swap...
Preprocessed datasets to reproduce figures for the manuscript "Alignment and Integration of Spatial ...
Seurat object and markers for each cluster(stored in .RData) and relevant metadata(including cell ba...
Seurat object & markers for each cluster (stored in .RData), and relevant meta data( including cell ...
Spatially Resolved Transcriptomics Exploration in Virtual Reality – Python pipeline </p
BackgroundSpatial transcriptomics (STs) simultaneously obtains the location and amount of gene expre...
TWAS weights files from three human spinal cord segments, created with FUSION. Each file consists o...
This is the PLIER model based on all human samples from recount2 database (https://jhubiostatistics....
This release is linked to the article "3-dimensional molecular cartography of human cerebral organoi...
BackgroundSpatial transcriptomics (STs) simultaneously obtains the location and amount of gene expre...
This dataset contains the raw files, results files and R workspace files (.RData) associated with th...
Code necessary to reproduce the analyses presented in the manuscript: Celloscope: a probabilistic mo...
<p>(A) Bootstrap analysis of regularized-log transformed counts to assign confidence levels to sampl...
Interactive 3D plotting for Seurat objects Works for tSNE and UMAP embeddings Maps gene expressi...
Seurat (2.3.4) object. Subcluster analysis for ectodermal epithelial cells. The analysis that result...
This repo contains processed data to reproduce results in the paper "SpotClean adjusts for spot swap...
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