Added #145 - Add functionality for handling gzip VCF files for #143 #166 - Add support for additional non-free NetMHC family tools #161 - Add rank values for prediction threshold and parameter use_affinity_thresholds to use affinity thresholds instead #160 Changed #162 - Use most recent epytope release (3.1.0) #168 - Use MHC class information specified in sample sheet Fixed #135 - Fix unique variant annotation field handling #136 #144 - Fix VCF file parsing #142 See CHANGELOG for more information
What's Changed Fix Vep plugin usage by @BarryDigby in https://github.com/nf-core/sarek/pull/688 Fix...
First release within nf-core Compliant within all nf-core requirements One script to rule them ...
v1.2.0 - 2023-08-24 - Nanometre Added #48 - Allow users to specify id column for heatmap #39 #46 - ...
Added #73 - Add support for the non-free NetMHC tool family #83 - Add option for threshold custo...
Added #180 - Add support for VEP annotated VCF files #172 #186 - Log messages from epaa.py script t...
Added 57 - Add option (--fasta_output) to write out FASTA file with protein sequences 44 - Add param...
Added #206 Updated the workflow picture Adjustments of the PRE_QUANTIFICATION subworkflow: OPENMS_F...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
[2.4.3] - 2022-03-24 Added Fixed #828 Improved error message if required metagenomic screening para...
Updates since 1.0.0: mhcflurry conda package added mhcflurry predictions added peak picking preproc...
Added Included the newest nf-core template (version 2.2) Adjustment of the README, including all co...
[2.1] - 2021-06-15 Enhancements & fixes Removed workflow to download data from public databases in ...
v1.0.0 - German Rollmops - [2023-02-15] Initial release of nf-core/funcscan, created with the nf-co...
[2.0.5] - 2019-01-30 Added #127 - Added a second testcase for testing the pipeline properly #129 - ...
Added #63 Replace local bcl_demultiplex subworkflow with nf-core version (@matthdsm) #63 Add bases_...
What's Changed Fix Vep plugin usage by @BarryDigby in https://github.com/nf-core/sarek/pull/688 Fix...
First release within nf-core Compliant within all nf-core requirements One script to rule them ...
v1.2.0 - 2023-08-24 - Nanometre Added #48 - Allow users to specify id column for heatmap #39 #46 - ...
Added #73 - Add support for the non-free NetMHC tool family #83 - Add option for threshold custo...
Added #180 - Add support for VEP annotated VCF files #172 #186 - Log messages from epaa.py script t...
Added 57 - Add option (--fasta_output) to write out FASTA file with protein sequences 44 - Add param...
Added #206 Updated the workflow picture Adjustments of the PRE_QUANTIFICATION subworkflow: OPENMS_F...
Added #317 Added bcftools stats for general genotyping statistics of VCF files #651 - Adds removal ...
[2.4.3] - 2022-03-24 Added Fixed #828 Improved error message if required metagenomic screening para...
Updates since 1.0.0: mhcflurry conda package added mhcflurry predictions added peak picking preproc...
Added Included the newest nf-core template (version 2.2) Adjustment of the README, including all co...
[2.1] - 2021-06-15 Enhancements & fixes Removed workflow to download data from public databases in ...
v1.0.0 - German Rollmops - [2023-02-15] Initial release of nf-core/funcscan, created with the nf-co...
[2.0.5] - 2019-01-30 Added #127 - Added a second testcase for testing the pipeline properly #129 - ...
Added #63 Replace local bcl_demultiplex subworkflow with nf-core version (@matthdsm) #63 Add bases_...
What's Changed Fix Vep plugin usage by @BarryDigby in https://github.com/nf-core/sarek/pull/688 Fix...
First release within nf-core Compliant within all nf-core requirements One script to rule them ...
v1.2.0 - 2023-08-24 - Nanometre Added #48 - Allow users to specify id column for heatmap #39 #46 - ...