Changelog SeqKit v0.10.2 seqkit: fix bug of parsing sequence ID delimited by tab (\t). #78 seqkit grep: better logic of --delete-matched. seqkit common/rmdup/split: use xxhash to replace MD5 when comparing with sequence, discard flag -m/--md5. seqkit stats: new flag -b/--basename for outputting basename instead of full path. Please cite W Shen, S Le, Y Li*, F Hu*. SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation. PLOS ONE. doi:10.1371/journal.pone.0163962. Links Tips run seqkit version to check update !!! run seqkit genautocomplete to update Bash completion !!! OS Arch File, 中国镜像 Download Count Linux 32-bit seqkit_linux_386.tar.gz, 中国镜像 Linux 64-bit seqkit_linux_amd64.tar.gz, 中国镜像 OS X 32-b...
Changes SeqKit v0.10.1 seqkit fx2tab: new option -q/--avg-qual for outputting average read quality...
Changes SeqKit v0.13.0 seqkit: fix a rare FASTA/Q parser bug. #127 seqkit seq: output sequence or ...
Changes SeqKit v0.16.0 new command seqkit head-genome: print sequences of the first genome with co...
Changes SeqKit v0.15.0 seqkit grep/locate: update help message. seqkit grep: search on both strand...
Changes SeqKit v0.11.0 seqkit: fix hanging when reading from truncated gzip file. new commands: se...
Changes SeqKit v0.14.0 new command seqkit pair: match up paired-end reads from two fastq files, fa...
Changelog SeqKit v0.9.0 seqkit: better handle of empty file, no error message shown. #36 new subcom...
Changelog SeqKit v0.7.2 seqkit tab2fx: fix a concurrency bug that occurs in low proprobability whe...
Latest Version SeqKit v0.9.1 seqkit faidx: fix bug of retrieving subsequence with multiple regions...
Changes SeqKit v0.12.0 seqkit: fix checking input file existence. new global flag --infile-list fo...
Changelog SeqKit v0.9.2 seqkit: stricter checking for value of global flag -t/--seq-type. seqkit s...
Changes SeqKit v2.4.0 - 2023-03-17 seqkit: support bzip2 format. #361 support setting compression l...
Changes SeqKit v2.3.1 - 2022-09-22 seqkit grep/locate: fix bug of FMIndex building for empty seque...
Changs SeqKit v0.10.0 seqkit: report error when input is directory. new command seqkit mutate: edi...
Changes SeqKit v0.9.3 seqkit stats: fix panic for empty file. #57 seqkit translate: add flag -x/--...
Changes SeqKit v0.10.1 seqkit fx2tab: new option -q/--avg-qual for outputting average read quality...
Changes SeqKit v0.13.0 seqkit: fix a rare FASTA/Q parser bug. #127 seqkit seq: output sequence or ...
Changes SeqKit v0.16.0 new command seqkit head-genome: print sequences of the first genome with co...
Changes SeqKit v0.15.0 seqkit grep/locate: update help message. seqkit grep: search on both strand...
Changes SeqKit v0.11.0 seqkit: fix hanging when reading from truncated gzip file. new commands: se...
Changes SeqKit v0.14.0 new command seqkit pair: match up paired-end reads from two fastq files, fa...
Changelog SeqKit v0.9.0 seqkit: better handle of empty file, no error message shown. #36 new subcom...
Changelog SeqKit v0.7.2 seqkit tab2fx: fix a concurrency bug that occurs in low proprobability whe...
Latest Version SeqKit v0.9.1 seqkit faidx: fix bug of retrieving subsequence with multiple regions...
Changes SeqKit v0.12.0 seqkit: fix checking input file existence. new global flag --infile-list fo...
Changelog SeqKit v0.9.2 seqkit: stricter checking for value of global flag -t/--seq-type. seqkit s...
Changes SeqKit v2.4.0 - 2023-03-17 seqkit: support bzip2 format. #361 support setting compression l...
Changes SeqKit v2.3.1 - 2022-09-22 seqkit grep/locate: fix bug of FMIndex building for empty seque...
Changs SeqKit v0.10.0 seqkit: report error when input is directory. new command seqkit mutate: edi...
Changes SeqKit v0.9.3 seqkit stats: fix panic for empty file. #57 seqkit translate: add flag -x/--...
Changes SeqKit v0.10.1 seqkit fx2tab: new option -q/--avg-qual for outputting average read quality...
Changes SeqKit v0.13.0 seqkit: fix a rare FASTA/Q parser bug. #127 seqkit seq: output sequence or ...
Changes SeqKit v0.16.0 new command seqkit head-genome: print sequences of the first genome with co...