shenwei356/seqkit: SeqKit v0.12.0

Changes SeqKit v0.12.0 seqkit: fix checking input file existence. new global flag --infile-list for long list of input files, if given, they are appended to files from cli arguments. seqkit faidx: supporting "truncated" (no ending newline charactor) file. seqkit seq: do not force switching on -g when using -m/-M. show recommendation if flag -t/--seq-type is not DNA/RNA when computing complement sequence. #103 seqkit translate: supporting multiple frames. #96 seqkit grep/locate: add detection and warning for space existing in search pattern/sequence. speed improvement (2X) for -m/--max-mismatch. shenwei356/bwt/issues/3 seqkit locate: new flag -M/--hide-matched for hiding matched sequences. #98 new flag -r/--use-regexp for explicitly using regular expression, so improve speed of default index operation. And you have to switch this on if using regexp now. #101 new flag -F/--use-fmi for improving search speed for lots of sequence patterns. seqkit rename: making IDs unique across multiple files, and can write into multiple files. #100 seqkit sample: fix stdin checking for flag -2. #102. seqkit rename/split/split2: fix detection of existed outdir. split split: fix bug of seqkit split -i -2 and parallizing it. seqkit version: checking update is optional (-u). Please cite W Shen, S Le, Y Li*, F Hu*. SeqKit: a cross-platform and ultrafast toolkit for FASTA/Q file manipulation. PLOS ONE. doi:10.1371/journal.pone.0163962. Links Tips run seqkit version to check update !!! run seqkit genautocomplete to update Bash completion !!! OS Arch File, 中国镜像 Download Count Linux 32-bit seqkit_linux_386.tar.gz, 中国镜像 Linux 64-bit seqkit_linux_amd64.tar.gz, 中国镜像 OS X 32-bit seqkit_darwin_386.tar.gz, 中国镜像 OS X 64-bit seqkit_darwin_amd64.tar.gz, 中国镜像 Windows 32-bit seqkit_windows_386.exe.tar.gz, 中国镜像 Windows 64-bit seqkit_windows_amd64.exe.tar.gz, 中国镜