fairliereese/LR-splitpipe: LR-splitpipe v2.0

New version of LR-splitpipe: demultiplex.py Improves performance on larger sets of reads by reading and processing reads in chunks Option to just run the linker scoring so that linker mismatch can be chosen at later steps (score_linkers mode) Allows for processing of multiple fastq files to be aggregated at the barcode correction step (subsequent usage of find_bcs and process_bcs step) Added options to tune number of allowable mismatches in each linker Improved QC Removed option to filter on corresponding Illumina data Removed option to filter based on read count per barcpde Added UMI deduplication with keep the longest read heuristic add_bam_tag.py Added option to append a suffix to each barcode. Useful if combining multiple SAM files from different experimentss down the line that might have overlapping barcode