v0.1.1 set number=1 when op=min see #40 fix when we get -0 converted to just '-' (#42) when an annotation bed file has a header with 'ref' or 'reference' and 'alt' or 'alternate', then match on the ref and alt values defined in those columns (not just on position as for bed). (vcfgo) allow double-digit number in header thanks @chapmanb correct END position when using ref and alt from a file with only a position (infer end as start + len(ref)) [thanks Tomas]
v0.2.7 (dev) restore multiple threads per annotation file after fix in biogo/hts (#64) add setid bu...
v0.2.3 allow pulling the 'FILTER' field from a VCF by specifing 'FILTER' in the fields add new op f...
Minor update to remove algorithm specific dependancies when parsing VCF files. This should make Ann...
v0.1.1 set number=1 when op=min see #40 fix when we get -0 converted to just '-' (#42) when an anno...
This contains minor usability fixes. 0314e53 - (HEAD -> master, origin/master, origin/HEAD) add vcf...
v0.2.7 restore multiple threads per annotation file after fix in biogo/hts (#64) new op setid built...
fixed a bug in write_vcf, the function was using REF/ALT coding in integer not character format. Th...
Added a new option for AnnotateVcf.pl to zip and tabix index its results file. Also improved the ...
This is a beta release of the next version, it will have performance and usability improvements: w...
v0.3.0 support for NON_REF to match any ALT allele (#92) more work on multiple alts (#87) there sh...
This release fixes and issue where the FORMAT column was added to the VCF header when no samples wer...
v0.2.7 (dev) restore multiple threads per annotation file after fix in biogo/hts (#64) new op setid...
Support for VEP v86 vcf2maf can now liftOver variants before annotation (e.g. from GRCh37 to GRCh38 ...
vcf2maf now supports Delly VCFs, producing MAFs with fields needed by cBioPortal. Fix: Remove INFO/S...
v0.2.4 30-40% speed improvement when annotating with few, large files by parallelizing decompressio...
v0.2.7 (dev) restore multiple threads per annotation file after fix in biogo/hts (#64) add setid bu...
v0.2.3 allow pulling the 'FILTER' field from a VCF by specifing 'FILTER' in the fields add new op f...
Minor update to remove algorithm specific dependancies when parsing VCF files. This should make Ann...
v0.1.1 set number=1 when op=min see #40 fix when we get -0 converted to just '-' (#42) when an anno...
This contains minor usability fixes. 0314e53 - (HEAD -> master, origin/master, origin/HEAD) add vcf...
v0.2.7 restore multiple threads per annotation file after fix in biogo/hts (#64) new op setid built...
fixed a bug in write_vcf, the function was using REF/ALT coding in integer not character format. Th...
Added a new option for AnnotateVcf.pl to zip and tabix index its results file. Also improved the ...
This is a beta release of the next version, it will have performance and usability improvements: w...
v0.3.0 support for NON_REF to match any ALT allele (#92) more work on multiple alts (#87) there sh...
This release fixes and issue where the FORMAT column was added to the VCF header when no samples wer...
v0.2.7 (dev) restore multiple threads per annotation file after fix in biogo/hts (#64) new op setid...
Support for VEP v86 vcf2maf can now liftOver variants before annotation (e.g. from GRCh37 to GRCh38 ...
vcf2maf now supports Delly VCFs, producing MAFs with fields needed by cBioPortal. Fix: Remove INFO/S...
v0.2.4 30-40% speed improvement when annotating with few, large files by parallelizing decompressio...
v0.2.7 (dev) restore multiple threads per annotation file after fix in biogo/hts (#64) add setid bu...
v0.2.3 allow pulling the 'FILTER' field from a VCF by specifing 'FILTER' in the fields add new op f...
Minor update to remove algorithm specific dependancies when parsing VCF files. This should make Ann...