ICB-DCM/pyABC: pyABC 0.10.14

Yannik Schälte
drickert
Emad Alamoudi
Elba Raimúndez Alvarez
Fabian Rost
Pat Laub

Publication date

February 2021

DOI

Abstract

General: Speed up parameter handling (30% internal speed-up) (#387) Streamline testing via tox and pre-commit hooks, add flake8 config file (#408) Update to python 3.9 (#411) Extract PEtab bounds and nominal parameters (#416) Allow specifying parameter names in density plots (#416) Normalize look-ahead sampling by subpopulation ESS (#418, #421) Documentation: Update contribution and issue guidelines (#408) Add example on yaml2sbml usage (#416) Clean up user docs on parallelization and storage (#419) Fixes: Fix redis for later started workers (#410) Fix PEtab parameter scale import, support all PEtab prior distributions (#413) Database: Add database migration scheme based on alembic (#419) Store proposal ids, increment database versio...