Data format: Update format and documentation with respect to data and parameter scales (#169) Define YAML schema for grouping PEtab files, also allowing for more complex combinations of files (#183) Library: Refactor library. Reorganize petab.core functions. Fix visualization w/o condition names #142 Extend validator Removed deprecated functions petab.Problem.get_constant_parameters and petab.sbml.constant_species_to_parameters Minor fixes and extension
Example Notebook for prior functionality (#438) Changed parameter indexing in profiling routines (#4...
Reproducibility and reusability of the results of data-based modeling studies are essential. Yet, th...
Python Fix simplification for pysb models (#1168) Pass verbosity flags to pysb network generation (...
Now allowing to specify concentrations of constant species in condition table Added specification of...
PEtab - a tsv-based data format for parameter estimation problems in systems biolog
Fix handling of species specified in PEtab condition table (#813) Fix some Visual C++ issues, update...
General: Speed up parameter handling (30% internal speed-up) (#387) Streamline testing via tox and ...
Import AMICI (https://github.com/ICB-DCM/AMICI/) models and the PEtab (https://github.com/ICB-DCM/PE...
Update to AMICI 0.10.13, fix API changes (#185). Start using PEtab import from AMICI to be able to ...
Fixed setting initial conditions for preequilibration (#784) Fixed species->parameter conversion du...
Rewrite AmiciObjective and PetabAmiciObjective simulation routine to directly use amici.petab_object...
Visualization: plot additional simulation points (not only at measurements) (#62), bugfix (#68) Docu...
Fixes (https://github.com/ICB-DCM/pyABC/pull/608) Fix petab test suite (different name resolution) ...
New Optimizers: FIDES (#506, #503 # 500) NLopt (#493) Extended PEtab support: PySB import (#437)...
Fixed (re)initialization of sensitivities if ExpData::fixedParametersPreequilibration is set (#994) ...
Example Notebook for prior functionality (#438) Changed parameter indexing in profiling routines (#4...
Reproducibility and reusability of the results of data-based modeling studies are essential. Yet, th...
Python Fix simplification for pysb models (#1168) Pass verbosity flags to pysb network generation (...
Now allowing to specify concentrations of constant species in condition table Added specification of...
PEtab - a tsv-based data format for parameter estimation problems in systems biolog
Fix handling of species specified in PEtab condition table (#813) Fix some Visual C++ issues, update...
General: Speed up parameter handling (30% internal speed-up) (#387) Streamline testing via tox and ...
Import AMICI (https://github.com/ICB-DCM/AMICI/) models and the PEtab (https://github.com/ICB-DCM/PE...
Update to AMICI 0.10.13, fix API changes (#185). Start using PEtab import from AMICI to be able to ...
Fixed setting initial conditions for preequilibration (#784) Fixed species->parameter conversion du...
Rewrite AmiciObjective and PetabAmiciObjective simulation routine to directly use amici.petab_object...
Visualization: plot additional simulation points (not only at measurements) (#62), bugfix (#68) Docu...
Fixes (https://github.com/ICB-DCM/pyABC/pull/608) Fix petab test suite (different name resolution) ...
New Optimizers: FIDES (#506, #503 # 500) NLopt (#493) Extended PEtab support: PySB import (#437)...
Fixed (re)initialization of sensitivities if ExpData::fixedParametersPreequilibration is set (#994) ...
Example Notebook for prior functionality (#438) Changed parameter indexing in profiling routines (#4...
Reproducibility and reusability of the results of data-based modeling studies are essential. Yet, th...
Python Fix simplification for pysb models (#1168) Pass verbosity flags to pysb network generation (...