nf-core/raredisease: 1.1.0 - Abu

What's Changed Annotate small indels with CADD scores by @ramprasadn in https://github.com/nf-core/raredisease/pull/325 convert bam to cram by @ramprasadn in https://github.com/nf-core/raredisease/pull/340 Add shiftfasta by @ramprasadn in https://github.com/nf-core/raredisease/pull/354 feat added MT deletion script by @Lucpen in https://github.com/nf-core/raredisease/pull/349 Adding upd by @hrydbeck in https://github.com/nf-core/raredisease/pull/364 Add ek by @Lucpen in https://github.com/nf-core/raredisease/pull/365 add chromograph by @ramprasadn in https://github.com/nf-core/raredisease/pull/366 Update to template 2.9 by @ramprasadn in https://github.com/nf-core/raredisease/pull/372 Avoid publishing uncompressed VCF-file from HMTNOTE_ANNOTATE by @asp8200 in https://github.com/nf-core/raredisease/pull/368 added check for case id by @EmmaCAndersson in https://github.com/nf-core/raredisease/pull/357 Gatkcnvcaller by @ramprasadn in https://github.com/nf-core/raredisease/pull/362 Update schema, output.md, and remove unused parameters by @ramprasadn in https://github.com/nf-core/raredisease/pull/373 update eklipse by @ramprasadn in https://github.com/nf-core/raredisease/pull/374 New Contributors @adamrtalbot made their first contribution in https://github.com/nf-core/raredisease/pull/360 @hrydbeck made their first contribution in https://github.com/nf-core/raredisease/pull/364 @asp8200 made their first contribution in https://github.com/nf-core/raredisease/pull/368 @EmmaCAndersson made their first contribution in https://github.com/nf-core/raredisease/pull/357 Full Changelog: https://github.com/nf-core/raredisease/compare/1.0.0...1.1.