Supplementary material 2 from: Rosenblad MA, Larsson E, Walker A, Thongklang N, Wurzbacher C, Nilsson RH (2022) Evidence for further non-coding RNA genes in the fungal rDNA region. MycoKeys 90: 203-213. https://doi.org/10.3897/mycokeys.90.84866

Additional file 13: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li (349218)
Ronald Breaker (76404)

October 2017

rps20 motif sequences. sto file for rps20 motif sequences and their alignment. (STO 2 kb

Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li
Ronald R. Breaker

October 2017

Abstract Background With the development of rapid and inexpensive DNA sequencing, the genome sequenc...

Supplementary material for: Identification of new riboswitches and ribozymes: a multiplicity of approaches and challenges

Naghdi, Mohammad Reza
Mucha, Clarisse
Smail, Katia
Ouellet, Jonathan
Perreault, Jonathan

August 2019

Supplementary material to the article: Identification of new riboswitches and ribozymes: a multipl...

Supplementary material 2 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

Alm Rosenblad, Magnus
Martín, María P.
Tedersoo, Leho
Ryberg, Martin K.
Larsson, Ellen
Wurzbacher, Christian
Abarenkov, Kessy
Nilsson, R. Henrik

May 2016

ITS multiple sequence alignment : Explanation note: A multiple sequence alignment in the NEXUS...

Evidence for further non-coding RNA genes in the fungal rDNA region

Rosenblad, Magnus Alm
Larsson, Ellen
Walker, Arttapon
Thongklang, Naritsada
Wurzbacher, Christian
Nilsson, R. Henrik

June 2022

Non-coding RNA (ncRNA) genes play important, but incompletely understood, roles in various cellular ...

Supplementary material 4 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

Alm Rosenblad, Magnus
Martín, María P.
Tedersoo, Leho
Ryberg, Martin K.
Larsson, Ellen
Wurzbacher, Christian
Abarenkov, Kessy
Nilsson, R. Henrik

May 2016

SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment with the S...

Supplementary material 3 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

Alm Rosenblad, Magnus
Martín, María P.
Tedersoo, Leho
Ryberg, Martin K.
Larsson, Ellen
Wurzbacher, Christian
Abarenkov, Kessy
Nilsson, R. Henrik

May 2016

ITS/SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment compri...

Supplementary material 1 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

Alm Rosenblad, Magnus
Martín, María P.
Tedersoo, Leho
Ryberg, Martin K.
Larsson, Ellen
Wurzbacher, Christian
Abarenkov, Kessy
Nilsson, R. Henrik

May 2016

Output from cmsearch and primers used : Explanation note: A) The output from cmsearch showing ...

Additional file 2: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li (349218)
Ronald Breaker (76404)

October 2017

HDV ribozyme sequences. sto file for HDV ribozyme sequences and their alignment. (STO 40 kb

Additional file 10: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li (349218)
Ronald Breaker (76404)

October 2017

Group I ribozyme sequences. sto file for group I ribozyme sequences and their alignment. (STO 59 kb

Sequencing of the non-transcribed spacer region of the ribosomal RNA genes of Neurospora crassa

DUTTA, S. K.
VERMA, M.

January 1990

The nontranscribed spacer (NTS) region of the ribosomal RNA (rRNA) genes is the most important regio...

Use of Comparative Genomics for Non-coding Rna Prediction and Investigation of Dna Introgression in Yeast

Kavanaugh, Laura Anne

April 2008

The rapid development of large-scale genomic sequencing has dramatically changed the field of geneti...

Supplementary material 1 from: Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH (2022) The curse of the uncultured fungus. MycoKeys 86: 177-194. https://doi.org/10.3897/mycokeys.86.76053

Abarenkov, Kessy
Kristiansson, Erik
Ryberg, Martin
Nogal-Prata, Sandra
Gómez-Martínez, Daniela
Stüer-Patowsky, Katrin
Jansson, Tobias
Põlme, Sergei
Ghobad-Nejhad, Masoomeh
Corcoll, Natàlia
Scharn, Ruud
Sánchez-García, Marisol
Khomich, Maryia
Wurzbacher, Christian
Nilsson, R. Henrik

February 2022

A list of the 29 journals under the Web of Science heading "Mycology" as of November 202

Secondary structure of the ribosomal PreRNA ITS2 region as a tool in studies of fungal diversity and phylogeny

Juuti, J.T.
Salo, V.

January 2006

Resumen del poster presentado al VI Meeting on Genetics and Cellular Biology of Basidiomycetes (GCBB...

Data from: The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities

Větrovský, Tomáš
Kolařík, Miroslav
Žifčáková, Lucia
Zelenka, Tomáš
Baldrian, Petr

Although the commonly used internal transcribed spacer region of rDNA (ITS) is well suited for taxon...

Additional file 13: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li (349218)
Ronald Breaker (76404)

October 2017

rps20 motif sequences. sto file for rps20 motif sequences and their alignment. (STO 2 kb

Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li
Ronald R. Breaker

October 2017

Abstract Background With the development of rapid and inexpensive DNA sequencing, the genome sequenc...

Supplementary material for: Identification of new riboswitches and ribozymes: a multiplicity of approaches and challenges

Naghdi, Mohammad Reza
Mucha, Clarisse
Smail, Katia
Ouellet, Jonathan
Perreault, Jonathan

August 2019

Supplementary material to the article: Identification of new riboswitches and ribozymes: a multipl...

Supplementary material 2 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

Alm Rosenblad, Magnus
Martín, María P.
Tedersoo, Leho
Ryberg, Martin K.
Larsson, Ellen
Wurzbacher, Christian
Abarenkov, Kessy
Nilsson, R. Henrik

May 2016

ITS multiple sequence alignment : Explanation note: A multiple sequence alignment in the NEXUS...

Evidence for further non-coding RNA genes in the fungal rDNA region

Rosenblad, Magnus Alm
Larsson, Ellen
Walker, Arttapon
Thongklang, Naritsada
Wurzbacher, Christian
Nilsson, R. Henrik

June 2022

Non-coding RNA (ncRNA) genes play important, but incompletely understood, roles in various cellular ...

Supplementary material 4 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

Alm Rosenblad, Magnus
Martín, María P.
Tedersoo, Leho
Ryberg, Martin K.
Larsson, Ellen
Wurzbacher, Christian
Abarenkov, Kessy
Nilsson, R. Henrik

May 2016

SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment with the S...

Supplementary material 3 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

Alm Rosenblad, Magnus
Martín, María P.
Tedersoo, Leho
Ryberg, Martin K.
Larsson, Ellen
Wurzbacher, Christian
Abarenkov, Kessy
Nilsson, R. Henrik

May 2016

ITS/SRP RNA multiple sequence alignment : Explanation note: Multiple sequence alignment compri...

Supplementary material 1 from: Rosenblad MA, Martín MP, Tedersoo L, Ryberg M, Larsson E, Wurzbacher C, Abarenkov K, Nilsson RH (2016) Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota). MycoKeys 13: 21-33. https://doi.org/10.3897/mycokeys.13.8579

Alm Rosenblad, Magnus
Martín, María P.
Tedersoo, Leho
Ryberg, Martin K.
Larsson, Ellen
Wurzbacher, Christian
Abarenkov, Kessy
Nilsson, R. Henrik

May 2016

Output from cmsearch and primers used : Explanation note: A) The output from cmsearch showing ...

Additional file 2: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li (349218)
Ronald Breaker (76404)

October 2017

HDV ribozyme sequences. sto file for HDV ribozyme sequences and their alignment. (STO 40 kb

Additional file 10: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li (349218)
Ronald Breaker (76404)

October 2017

Group I ribozyme sequences. sto file for group I ribozyme sequences and their alignment. (STO 59 kb

Sequencing of the non-transcribed spacer region of the ribosomal RNA genes of Neurospora crassa

DUTTA, S. K.
VERMA, M.

January 1990

The nontranscribed spacer (NTS) region of the ribosomal RNA (rRNA) genes is the most important regio...

Use of Comparative Genomics for Non-coding Rna Prediction and Investigation of Dna Introgression in Yeast

Kavanaugh, Laura Anne

April 2008

The rapid development of large-scale genomic sequencing has dramatically changed the field of geneti...

Supplementary material 1 from: Abarenkov K, Kristiansson E, Ryberg M, Nogal-Prata S, Gómez-Martínez D, Stüer-Patowsky K, Jansson T, Põlme S, Ghobad-Nejhad M, Corcoll N, Scharn R, Sánchez-García M, Khomich M, Wurzbacher C, Nilsson RH (2022) The curse of the uncultured fungus. MycoKeys 86: 177-194. https://doi.org/10.3897/mycokeys.86.76053

Abarenkov, Kessy
Kristiansson, Erik
Ryberg, Martin
Nogal-Prata, Sandra
Gómez-Martínez, Daniela
Stüer-Patowsky, Katrin
Jansson, Tobias
Põlme, Sergei
Ghobad-Nejhad, Masoomeh
Corcoll, Natàlia
Scharn, Ruud
Sánchez-García, Marisol
Khomich, Maryia
Wurzbacher, Christian
Nilsson, R. Henrik

February 2022

A list of the 29 journals under the Web of Science heading "Mycology" as of November 202

Secondary structure of the ribosomal PreRNA ITS2 region as a tool in studies of fungal diversity and phylogeny

Juuti, J.T.
Salo, V.

January 2006

Resumen del poster presentado al VI Meeting on Genetics and Cellular Biology of Basidiomycetes (GCBB...

Data from: The rpb2 gene represents a viable alternative molecular marker for the analysis of environmental fungal communities

Větrovský, Tomáš
Kolařík, Miroslav
Žifčáková, Lucia
Zelenka, Tomáš
Baldrian, Petr

Although the commonly used internal transcribed spacer region of rDNA (ITS) is well suited for taxon...

Additional file 13: of Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li (349218)
Ronald Breaker (76404)

October 2017

rps20 motif sequences. sto file for rps20 motif sequences and their alignment. (STO 2 kb

Identification of 15 candidate structured noncoding RNA motifs in fungi by comparative genomics

Sanshu Li
Ronald R. Breaker

October 2017

Abstract Background With the development of rapid and inexpensive DNA sequencing, the genome sequenc...

Supplementary material for: Identification of new riboswitches and ribozymes: a multiplicity of approaches and challenges

Naghdi, Mohammad Reza
Mucha, Clarisse
Smail, Katia
Ouellet, Jonathan
Perreault, Jonathan

August 2019

Supplementary material to the article: Identification of new riboswitches and ribozymes: a multipl...

Supplementary material 2 from: Rosenblad MA, Larsson E, Walker A, Thongklang N, Wurzbacher C, Nilsson RH (2022) Evidence for further non-coding RNA genes in the fungal rDNA region. MycoKeys 90: 203-213. https://doi.org/10.3897/mycokeys.90.84866

Abstract

Extracted data

Supplementary material 2 from: Rosenblad MA, Larsson E, Walker A, Thongklang N, Wurzbacher C, Nilsson RH (2022) Evidence for further non-coding RNA genes in the fungal rDNA region. MycoKeys 90: 203-213. https://doi.org/10.3897/mycokeys.90.84866

Abstract

Extracted data

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