What's Changed [MRG] add code to support skipping genomes by ident by @ctb in https://github.com/dib-lab/genome-grist/pull/255 [MRG] update snakemake version in environment.yml, & other minor fixes by @ctb in https://github.com/dib-lab/genome-grist/pull/253 [MRG] add gh-pages deploy action by @ctb in https://github.com/dib-lab/genome-grist/pull/252 [MRG] add pip check to GitHub actions by @ctb in https://github.com/dib-lab/genome-grist/pull/254 [MRG] update github actions to use modern conda/caching by @ctb in https://github.com/dib-lab/genome-grist/pull/256 [MRG] update actions to make sure right version(s) are being used by @ctb in https://github.com/dib-lab/genome-grist/pull/258 Full Changelog: https://github.com/dib-lab/genome-grist/c...
Commits fb6a4e4: Include taxonomy in identifiers and attributes indices (Richard Challis) #100 692c...
Commits bdb1174: update package scripts to add ui code to release (Richard Challis) f4b1cbb: add ve...
Commits 9b1a236: improve tree navigation with levels (Richard Challis) #143 ec61993: Feature/analys...
What's Changed [MRG] update sourmash and screed versions by @ctb in https://github.com/dib-lab/geno...
Significant documentation updates as well as configuration file updates to support local databases. ...
What's Changed [MRG] update ignore_ident code for later use too by @ctb in https://github.com/dib-l...
What's Changed [MRG] update notebooks for long contig names; add normalized snp figure (fig 11) by ...
What's Changed [MRG] fix identifier munging for local databases by @ctb in https://github.com/dib-l...
What's Changed [MRG] split identifiers on whitespace, not just spaces. by @ctb in https://github.co...
What's Changed [MRG] add VCF-calculating code from #124 by @ctb in https://github.com/dib-lab/genom...
Upgrading to v0.9.0 There are several significant changes to output files from v0.8.4 that will affe...
What's Changed Rjchallis/issue86 by @rjchallis in https://github.com/genomehubs/genomehubs/pull/88 ...
What's Changed GTDB-tk requires rule extract_gtdb to run first by @Waschina in https://github.com/m...
Commits e98634a: Bump async from 2.6.3 to 2.6.4 in /src/genomehubs-ui (dependabot[bot]) #127 284570...
What's Changed Start an atlas project from public data in SRA Docs Make atlas ready for python 3.10...
Commits fb6a4e4: Include taxonomy in identifiers and attributes indices (Richard Challis) #100 692c...
Commits bdb1174: update package scripts to add ui code to release (Richard Challis) f4b1cbb: add ve...
Commits 9b1a236: improve tree navigation with levels (Richard Challis) #143 ec61993: Feature/analys...
What's Changed [MRG] update sourmash and screed versions by @ctb in https://github.com/dib-lab/geno...
Significant documentation updates as well as configuration file updates to support local databases. ...
What's Changed [MRG] update ignore_ident code for later use too by @ctb in https://github.com/dib-l...
What's Changed [MRG] update notebooks for long contig names; add normalized snp figure (fig 11) by ...
What's Changed [MRG] fix identifier munging for local databases by @ctb in https://github.com/dib-l...
What's Changed [MRG] split identifiers on whitespace, not just spaces. by @ctb in https://github.co...
What's Changed [MRG] add VCF-calculating code from #124 by @ctb in https://github.com/dib-lab/genom...
Upgrading to v0.9.0 There are several significant changes to output files from v0.8.4 that will affe...
What's Changed Rjchallis/issue86 by @rjchallis in https://github.com/genomehubs/genomehubs/pull/88 ...
What's Changed GTDB-tk requires rule extract_gtdb to run first by @Waschina in https://github.com/m...
Commits e98634a: Bump async from 2.6.3 to 2.6.4 in /src/genomehubs-ui (dependabot[bot]) #127 284570...
What's Changed Start an atlas project from public data in SRA Docs Make atlas ready for python 3.10...
Commits fb6a4e4: Include taxonomy in identifiers and attributes indices (Richard Challis) #100 692c...
Commits bdb1174: update package scripts to add ui code to release (Richard Challis) f4b1cbb: add ve...
Commits 9b1a236: improve tree navigation with levels (Richard Challis) #143 ec61993: Feature/analys...