Datasets for : High-resolution detection and differential expression analysis of transcription start sites using MAPCap | ORKG Ask

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Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

January 2021

Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of ...

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

Grapotte, Mathys
Saraswat, Manu
Bessière, Chloé
Menichelli, Christophe
Ramilowski, Jordan A
Severin, Jessica
Hayashizaki, Yoshihide
Itoh, Masayoshi
Tagami, Michihira
Murata, Mitsuyoshi
Kojima-Ishiyama, Miki
Noma, Shohei
Noguchi, Shuhei
Kasukawa, Takeya
Hasegawa, Akira
Suzuki, Harukazu
Nishiyori-Sueki, Hiromi
Frith, Martin C
Chatelain, Clément
Carninci, Piero
de Hoon, Michiel J L
Wasserman, Wyeth W
Bréhélin, Laurent
Lecellier, Charles-Henri

June 2021

Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of ...

Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks.

Colecchia, Federico
Kottwitz, Denise
Wagner, Mandy
Pfenninger, Cosima
Thiel, Gerald
Tamm, Ingo
Peterson, Carsten
Nuber, Ulrike

January 2009

The prediction of transcription factor binding sites in genomic sequences is in principle very usefu...

MapCap allows high-resolution detection and differential expression analysis of transcription start sites

Bhardwaj, V.
Semplicio, G.
Erdogdu, N.
Manke, T.
Akhtar, A.

July 2019

The position, shape and number of transcription start sites (TSS) are critical determinants of gene ...

Analysis of changes in transcription start site distribution by a classification approach

Liang, Kuo-ching
Suzuki, Yutaka
Kumagai, Yutaro
Nakai, Kenta

March 2014

AbstractChange in transcription start site (TSS) usage is an important mechanism for the control of ...

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)

Ohmiya, Hiroko
Vitezic, Morana
Frith, Martin C.
Itoh, Masayoshi
Carninci, Piero
Forrest, Alistair R. R.
Hayashizaki, Yoshihide
Lassmann, Timo
FANTOM Consortium
Beckhouse, Anthony
Wells, Christine
Vijayan, Dipti
Mason, Elizabeth
Wolvetang, Ernst
Hitchens, Kelly
Le Cao, Kim-Anh
Nielsen, Lars
Fearnley, Liam
Kenna, Tony
Blumenthal, Antje

April 2014

Background: Next generation sequencing based technologies are being extensively used to study transc...

Expression profiles of stage- and cell type–specific transcription start sites (TSSs).

Marina Lizio (185917)
Ruslan Deviatiiarov (4413781)
Hiroki Nagai (236046)
Laura Galan (4413778)
Erik Arner (16833)
Masayoshi Itoh (15728)
Timo Lassmann (14297)
Takeya Kasukawa (3041)
Akira Hasegawa (2954676)
Marian A. Ros (623053)
Yoshihide Hayashizaki (3101)
Piero Carninci (3015)
Alistair R. R. Forrest (185918)
Hideya Kawaji (13861)
Oleg Gusev (237183)
Guojun Sheng (44470)

September 2017

<p>Cap Analysis of Gene Expression (CAGE) TSSs associated with pluripotency and germ layer–specific ...

Cappable-seq data and statistics of enrichment reported by ToNER and TSSAR for known transcription start sites (TSS).

Yuttachon Promworn (4047853)
Pavita Kaewprommal (3544613)
Philip J. Shaw (216195)
Apichart Intarapanich (4047850)
Sissades Tongsima (79312)
Jittima Piriyapongsa (35259)

May 2017

<p>The Cappable-seq data and statistics of enrichment for 146 known <i>E</i>. <i>coli</i> TSS annota...

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

January 2021

Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of ...

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

Grapotte, Mathys
Saraswat, Manu
Bessière, Chloé
Menichelli, Christophe
Ramilowski, Jordan A
Severin, Jessica
Hayashizaki, Yoshihide
Itoh, Masayoshi
Tagami, Michihira
Murata, Mitsuyoshi
Kojima-Ishiyama, Miki
Noma, Shohei
Noguchi, Shuhei
Kasukawa, Takeya
Hasegawa, Akira
Suzuki, Harukazu
Nishiyori-Sueki, Hiromi
Frith, Martin C
Chatelain, Clément
Carninci, Piero
de Hoon, Michiel J L
Wasserman, Wyeth W
Bréhélin, Laurent
Lecellier, Charles-Henri

June 2021

Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of ...

Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks.

Colecchia, Federico
Kottwitz, Denise
Wagner, Mandy
Pfenninger, Cosima
Thiel, Gerald
Tamm, Ingo
Peterson, Carsten
Nuber, Ulrike

January 2009

The prediction of transcription factor binding sites in genomic sequences is in principle very usefu...

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE)

Ohmiya, Hiroko
Vitezic, Morana
Frith, Martin C.
Itoh, Masayoshi
Carninci, Piero
Forrest, Alistair R. R.
Hayashizaki, Yoshihide
Lassmann, Timo
FANTOM Consortium
Beckhouse, Anthony
Wells, Christine
Vijayan, Dipti
Mason, Elizabeth
Wolvetang, Ernst
Hitchens, Kelly
Le Cao, Kim-Anh
Nielsen, Lars
Fearnley, Liam
Kenna, Tony
Blumenthal, Antje

April 2014

Background: Next generation sequencing based technologies are being extensively used to study transc...

Expression profiles of stage- and cell type–specific transcription start sites (TSSs).

Marina Lizio (185917)
Ruslan Deviatiiarov (4413781)
Hiroki Nagai (236046)
Laura Galan (4413778)
Erik Arner (16833)
Masayoshi Itoh (15728)
Timo Lassmann (14297)
Takeya Kasukawa (3041)
Akira Hasegawa (2954676)
Marian A. Ros (623053)
Yoshihide Hayashizaki (3101)
Piero Carninci (3015)
Alistair R. R. Forrest (185918)
Hideya Kawaji (13861)
Oleg Gusev (237183)
Guojun Sheng (44470)

September 2017

<p>Cap Analysis of Gene Expression (CAGE) TSSs associated with pluripotency and germ layer–specific ...

Cappable-seq data and statistics of enrichment reported by ToNER and TSSAR for known transcription start sites (TSS).

Yuttachon Promworn (4047853)
Pavita Kaewprommal (3544613)
Philip J. Shaw (216195)
Apichart Intarapanich (4047850)
Sissades Tongsima (79312)
Jittima Piriyapongsa (35259)

May 2017

<p>The Cappable-seq data and statistics of enrichment for 146 known <i>E</i>. <i>coli</i> TSS annota...

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

January 2021

Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of ...

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network.

Grapotte, Mathys
Saraswat, Manu
Bessière, Chloé
Menichelli, Christophe
Ramilowski, Jordan A
Severin, Jessica
Hayashizaki, Yoshihide
Itoh, Masayoshi
Tagami, Michihira
Murata, Mitsuyoshi
Kojima-Ishiyama, Miki
Noma, Shohei
Noguchi, Shuhei
Kasukawa, Takeya
Hasegawa, Akira
Suzuki, Harukazu
Nishiyori-Sueki, Hiromi
Frith, Martin C
Chatelain, Clément
Carninci, Piero
de Hoon, Michiel J L
Wasserman, Wyeth W
Bréhélin, Laurent
Lecellier, Charles-Henri

June 2021

Using the Cap Analysis of Gene Expression (CAGE) technology, the FANTOM5 consortium provided one of ...

Tissue-specific regulatory network extractor (TS-REX): a database and software resource for the tissue and cell type-specific investigation of transcription factor-gene networks.

Colecchia, Federico
Kottwitz, Denise
Wagner, Mandy
Pfenninger, Cosima
Thiel, Gerald
Tamm, Ingo
Peterson, Carsten
Nuber, Ulrike

January 2009

The prediction of transcription factor binding sites in genomic sequences is in principle very usefu...