VCF compression improvements including for VEP, gnomAD, ExAC, ICGC, COSMIC, dbNSFP, Mastermind -annotated files FASTQ with --fast: some tradeoffs were tweaked - now it is a little bit slower but significantly better compression Fixed bug that affected headerless SAM (but not BAM) files when compressed with a reference file with mismatching contig name
Fixed a bug in the vcf2hdf5_parallel script (#58 - @travc). Fixed a bug relating to the is_snp field...
dbNSFP is a database developed for functional prediction and annotation of all potential non-synonym...
dbNSFP is a database developed for functional prediction and annotation of all potential non-synonym...
genozip is a new lossless compression tool for VCF (Variant Call Format) files. By applying field-sp...
FASTQ: better compression for Ultima Genomics, Singular Genomics and Element Biosciences files BAM: ...
VCF: better compression when using --reference genounzip of a file that was originally compressed wi...
VCF: Better compression of Isaac/starling files Recognized SAM files even if they incorrectly have a...
We present Genozip, a universal and fully featured compression software for genomic data. Genozip is...
Changes Add support for input directly VCF (--vcf) files instead of FASTA or FASTQ files. These VCF...
v0.2.4 30-40% speed improvement when annotating with few, large files by parallelizing decompressio...
This thesis introduces specialized compression schemes for integer type annotations in genomic VCF ...
The dropping cost of sequencing human DNA has allowed for fast development of several projects aroun...
Summary of new changes: I fixed multiple bugs that resulted from lack of coverage of some possible i...
This release fixes and issue where the FORMAT column was added to the VCF header when no samples wer...
This release includes the following changes: fast-co-compact: fix a big introduced on 10/6/2016 whi...
Fixed a bug in the vcf2hdf5_parallel script (#58 - @travc). Fixed a bug relating to the is_snp field...
dbNSFP is a database developed for functional prediction and annotation of all potential non-synonym...
dbNSFP is a database developed for functional prediction and annotation of all potential non-synonym...
genozip is a new lossless compression tool for VCF (Variant Call Format) files. By applying field-sp...
FASTQ: better compression for Ultima Genomics, Singular Genomics and Element Biosciences files BAM: ...
VCF: better compression when using --reference genounzip of a file that was originally compressed wi...
VCF: Better compression of Isaac/starling files Recognized SAM files even if they incorrectly have a...
We present Genozip, a universal and fully featured compression software for genomic data. Genozip is...
Changes Add support for input directly VCF (--vcf) files instead of FASTA or FASTQ files. These VCF...
v0.2.4 30-40% speed improvement when annotating with few, large files by parallelizing decompressio...
This thesis introduces specialized compression schemes for integer type annotations in genomic VCF ...
The dropping cost of sequencing human DNA has allowed for fast development of several projects aroun...
Summary of new changes: I fixed multiple bugs that resulted from lack of coverage of some possible i...
This release fixes and issue where the FORMAT column was added to the VCF header when no samples wer...
This release includes the following changes: fast-co-compact: fix a big introduced on 10/6/2016 whi...
Fixed a bug in the vcf2hdf5_parallel script (#58 - @travc). Fixed a bug relating to the is_snp field...
dbNSFP is a database developed for functional prediction and annotation of all potential non-synonym...
dbNSFP is a database developed for functional prediction and annotation of all potential non-synonym...
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