Bugfix Avoid issue with corrupted repository after first use when using the pipeline from github eg: nextflow run tron-bioinformatics/covigator-ngs-pipeline -r v0.9.
Changes Add support for STAR for RNA-seq alignment Record software versions in the samples outpu
Changes Removes pickle-mixin from dependencies Upgrades pysam version to 0.19.1 Fix biopython versi...
This is a minor release that fixes a bug introduced in v0.5.2. external annotation were not added in...
Bugfix release The variant normalization workflow cached in the assets folder was sometimes causi...
First pre-release integrating alignment, mark duplicates, realignment around indels, variant calling...
Bugfixes: Library distributed version was not specified and it was causing some incompatibility wit...
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annota...
Changes Performance improvement by merging the last two steps (SnpEff and bgzip/tabix) into a singl...
Bugfix on swapped tumor and normal BAMs in the nextflow workflow. The Python package version remains...
Bugfixes Fix the documentation. Now the documentation at readthedocs is up to date Fix crash in neo...
Release equivalent to v0.3.0, this one should come out with a DOI for referencing this software
Major changes Add read trimming with fastp Output QC results in JSON format Integrate 4 variant...
Bugfix Python dependencies are defined now in a more flexible way using the compatibility operator ...
Changes BAM preprocessing is using a local folder as temp folder Pangolin is only executed for LoFr...
Major changes: Add coverage analysis for FASTQ pipeline Add Pfam domain annotations in the outpu...
Changes Add support for STAR for RNA-seq alignment Record software versions in the samples outpu
Changes Removes pickle-mixin from dependencies Upgrades pysam version to 0.19.1 Fix biopython versi...
This is a minor release that fixes a bug introduced in v0.5.2. external annotation were not added in...
Bugfix release The variant normalization workflow cached in the assets folder was sometimes causi...
First pre-release integrating alignment, mark duplicates, realignment around indels, variant calling...
Bugfixes: Library distributed version was not specified and it was causing some incompatibility wit...
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annota...
Changes Performance improvement by merging the last two steps (SnpEff and bgzip/tabix) into a singl...
Bugfix on swapped tumor and normal BAMs in the nextflow workflow. The Python package version remains...
Bugfixes Fix the documentation. Now the documentation at readthedocs is up to date Fix crash in neo...
Release equivalent to v0.3.0, this one should come out with a DOI for referencing this software
Major changes Add read trimming with fastp Output QC results in JSON format Integrate 4 variant...
Bugfix Python dependencies are defined now in a more flexible way using the compatibility operator ...
Changes BAM preprocessing is using a local folder as temp folder Pangolin is only executed for LoFr...
Major changes: Add coverage analysis for FASTQ pipeline Add Pfam domain annotations in the outpu...
Changes Add support for STAR for RNA-seq alignment Record software versions in the samples outpu
Changes Removes pickle-mixin from dependencies Upgrades pysam version to 0.19.1 Fix biopython versi...
This is a minor release that fixes a bug introduced in v0.5.2. external annotation were not added in...
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