nf-core/cageseq: [1.0.0] - Gold Lion - 2020-10-16
- TrisKast
- mashehu
- Kevin Menden
- Maxime Garcia
- nf-core bot
- Alexander Peltzer
- Harshil Patel
- Phil Ewels
Publication date
October 2020
DOIAbstract
v1.0.0 (Gold Lion) - [2020-10-16] Initial release of nf-core/cageseq, created with the nf-core template. Pipeline summary Input read QC (FastQC) Adapter + EcoP15 + 5'G trimming (cutadapt) (optional) rRNA filtering (SortMeRNA), Trimmed and filtered read QC (FastQC) Read alignment to a reference genome (STAR or bowtie1) CAGE tag counting and clustering (paraclu) CAGE tag clustering QC (RSeQC) Present QC and visualisation for raw read, alignment and clustering results (MultiQC
Add to ORKG