Full summary statistics of mixQTL for GTEx v8 Testis

Liang, Yanyu
Barbeira, Alvaro Numa
Im, Hae Kyung

April 2020

# Introduction Sample data for mixQTL (https://github.com/liangyy/mixqtl). Data is derived from th...

Single QTL mapping of Hstx2 on Chr X.

Tanmoy Bhattacharyya (585402)
Radka Reifová (399704)
Soňa Gregorová (124489)
Petr Simecek (99422)
Vaclav Gergelits (585403)
Martin Mistrik (585404)
Iva Martincova (585405)
Jaroslav Piálek (124496)
Jiri Forejt (24636)

February 2014

(A) QTL analysis of testes weight in the (B6.PWD-Chr X×B6)F1×PWD cross showed a 1.5-LOD support i...

Single QTL scan for autosomal loci supporting Hstx2 independent intrameiotic arrest of (Mmd×Mmm)F1 intersubspecific hybrids.

Tanmoy Bhattacharyya (585402)
Radka Reifová (399704)
Soňa Gregorová (124489)
Petr Simecek (99422)
Vaclav Gergelits (585403)
Martin Mistrik (585404)
Iva Martincova (585405)
Jaroslav Piálek (124496)
Jiri Forejt (24636)

February 2014

(A) Testes weight QTLs (red) reached significance on Chrs 3 (marker UNC030163295, Chr3: 104,320,6...

Full summary statistics of mixQTL for GTEx v8 Prostate

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Stomach

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Pancreas

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Whole_Blood

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Brain_Cortex

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Artery_Tibial

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Cells_EBV-transformed_lymphocytes

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Extended data: Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

Nicole R. Gay
Michael Gloudemans
Margaret L. Antonio
Brunilda Balliu
YoSon Park
Alicia R. Martin
Shaila Musharoff
Abhiram Rao
François Aguet
Alvaro Barbeira
Rodrigo Bonazzola
Farhad Hormozdiari
GTEx Consortium
Kristin G. Ardlie
Christopher D. Brown
Hae Kyung Im
Tuuli Lappalainen
Xiaoquan Wen
Stephen B. Montgomery

July 2020

eQTL summary statistics and GWAS colocalization posterior probabilities from eQTL calling in an admi...

Dissecting the genetic architecture of F1 hybrid sterility in PWD/Ph and C57BL/6J backcross

Dzur-Gejdošová, Maria
Simecek, Petr
Gregorova, Sona
Bhattacharyya, Tanomy
Forejt, Jiri

April 2012

QTL mapping data in R/qtl format: BW = body weight [g], TW testes weight [mg], SC = sperm cells coun...

Qxpak: a versatile mixed model application for genetical genomics and QTL analyses

M. Pérez-enciso
I. Misztal

January 2004

Motivation: Current methodology and software for quantitat-ive trait loci (QTL) analyses do not use ...

Source code: Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

Nicole R. Gay

July 2020

This version of the source code reflects analyses included in the peer-reviewed manuscript "Impact o...

sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset

Garrido-Martín, Diego
Borsari, Beatrice
Calvo, Miquel
Reverter, Ferran
Guigó, Roderic

October 2020

sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset, as described in the publication Identi...

mixQTL sample data

Liang, Yanyu
Barbeira, Alvaro Numa
Im, Hae Kyung

April 2020

# Introduction Sample data for mixQTL (https://github.com/liangyy/mixqtl). Data is derived from th...

Single QTL mapping of Hstx2 on Chr X.

Tanmoy Bhattacharyya (585402)
Radka Reifová (399704)
Soňa Gregorová (124489)
Petr Simecek (99422)
Vaclav Gergelits (585403)
Martin Mistrik (585404)
Iva Martincova (585405)
Jaroslav Piálek (124496)
Jiri Forejt (24636)

February 2014

(A) QTL analysis of testes weight in the (B6.PWD-Chr X×B6)F1×PWD cross showed a 1.5-LOD support i...

Single QTL scan for autosomal loci supporting Hstx2 independent intrameiotic arrest of (Mmd×Mmm)F1 intersubspecific hybrids.

Tanmoy Bhattacharyya (585402)
Radka Reifová (399704)
Soňa Gregorová (124489)
Petr Simecek (99422)
Vaclav Gergelits (585403)
Martin Mistrik (585404)
Iva Martincova (585405)
Jaroslav Piálek (124496)
Jiri Forejt (24636)

February 2014

(A) Testes weight QTLs (red) reached significance on Chrs 3 (marker UNC030163295, Chr3: 104,320,6...

Full summary statistics of mixQTL for GTEx v8 Prostate

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Stomach

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Pancreas

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Whole_Blood

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Brain_Cortex

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Artery_Tibial

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Full summary statistics of mixQTL for GTEx v8 Cells_EBV-transformed_lymphocytes

Liang, Yanyu
François Aguet
Alvaro Barbeira
Kristin Ardlie
Hae Kyung Im

September 2020

The mixQTL method is described in paper doi.org/10.1101/2020.04.22.050666. Please cite the original ...

Extended data: Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

Nicole R. Gay
Michael Gloudemans
Margaret L. Antonio
Brunilda Balliu
YoSon Park
Alicia R. Martin
Shaila Musharoff
Abhiram Rao
François Aguet
Alvaro Barbeira
Rodrigo Bonazzola
Farhad Hormozdiari
GTEx Consortium
Kristin G. Ardlie
Christopher D. Brown
Hae Kyung Im
Tuuli Lappalainen
Xiaoquan Wen
Stephen B. Montgomery

July 2020

eQTL summary statistics and GWAS colocalization posterior probabilities from eQTL calling in an admi...

Dissecting the genetic architecture of F1 hybrid sterility in PWD/Ph and C57BL/6J backcross

Dzur-Gejdošová, Maria
Simecek, Petr
Gregorova, Sona
Bhattacharyya, Tanomy
Forejt, Jiri

April 2012

QTL mapping data in R/qtl format: BW = body weight [g], TW testes weight [mg], SC = sperm cells coun...

Qxpak: a versatile mixed model application for genetical genomics and QTL analyses

M. Pérez-enciso
I. Misztal

January 2004

Motivation: Current methodology and software for quantitat-ive trait loci (QTL) analyses do not use ...

Source code: Impact of admixture and ancestry on eQTL analysis and GWAS colocalization in GTEx

Nicole R. Gay

July 2020

This version of the source code reflects analyses included in the peer-reviewed manuscript "Impact o...

sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset

Garrido-Martín, Diego
Borsari, Beatrice
Calvo, Miquel
Reverter, Ferran
Guigó, Roderic

October 2020

sQTL catalog generated by sqtlseeker2-nf in the GTEx dataset, as described in the publication Identi...

mixQTL sample data

Liang, Yanyu
Barbeira, Alvaro Numa
Im, Hae Kyung

April 2020

# Introduction Sample data for mixQTL (https://github.com/liangyy/mixqtl). Data is derived from th...

Single QTL mapping of Hstx2 on Chr X.

Tanmoy Bhattacharyya (585402)
Radka Reifová (399704)
Soňa Gregorová (124489)
Petr Simecek (99422)
Vaclav Gergelits (585403)
Martin Mistrik (585404)
Iva Martincova (585405)
Jaroslav Piálek (124496)
Jiri Forejt (24636)

February 2014

(A) QTL analysis of testes weight in the (B6.PWD-Chr X×B6)F1×PWD cross showed a 1.5-LOD support i...

Single QTL scan for autosomal loci supporting Hstx2 independent intrameiotic arrest of (Mmd×Mmm)F1 intersubspecific hybrids.

Tanmoy Bhattacharyya (585402)
Radka Reifová (399704)
Soňa Gregorová (124489)
Petr Simecek (99422)
Vaclav Gergelits (585403)
Martin Mistrik (585404)
Iva Martincova (585405)
Jaroslav Piálek (124496)
Jiri Forejt (24636)

February 2014

(A) Testes weight QTLs (red) reached significance on Chrs 3 (marker UNC030163295, Chr3: 104,320,6...

Full summary statistics of mixQTL for GTEx v8 Testis

Abstract

Extracted data

Full summary statistics of mixQTL for GTEx v8 Testis

Abstract

Extracted data

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