A: relationship between ωNA and tree branch length; B: relationship between ωA and tree branch length; C: relationship between α and tree branch length. See text for a definition of each metrics. Sample sites are coloured by region. The blue line represents the value of the regression line. In all panels each point represents a sampling site and is coloured according to the region in which it was sampled. Displayed is the adjusted R2 along with its p-value. (TIF)</p
Evolution leaves heterogeneous patterns of nucleotide variation across the genome, with different lo...
<p>In each panel, the tree on the left is colored by species prevalence (black to orange), while the...
FIGURE S6. The effects of selection on species tree estimates for the deep species tree simulations....
Results of linear models testing the effect of tree branch length to the root extracted from a treem...
These provide tests of the relationship between branch length of the population phylogenies based on...
<p>Reduced datasets were used to investigate the impact of model-choice on branch lengths. <b>A</b>....
<p>Results from the simulation study analyzing the effects of branch length on accuracy of tree infe...
<p>Branch lengths estimated for cpDNA-9 (A) and mammalian-mtDNA (B) are compared among models. The a...
FIGURE S5. The effects of selection on species tree estimates for the moderate species tree simulati...
FIGURE S1. The effects of species-specific positive selection on effective population size and dive...
A) population phylogenetic tree inferred from the pairwise FST values (see also S3 Fig) superimposed...
<p>Left: relationship between root-to-tip variance and tree length for simulated (<i>clock</i> and <...
FIGURE S2. The effects of species-specific positive selection on effective population size and dive...
<p>A: mean branch lengths in trees from dynamic networks with a pathogen with duration of infectious...
<p>For setting and (), we modified all 100 birth-death trees (A) and all 100 coalescent trees (B) ...
Evolution leaves heterogeneous patterns of nucleotide variation across the genome, with different lo...
<p>In each panel, the tree on the left is colored by species prevalence (black to orange), while the...
FIGURE S6. The effects of selection on species tree estimates for the deep species tree simulations....
Results of linear models testing the effect of tree branch length to the root extracted from a treem...
These provide tests of the relationship between branch length of the population phylogenies based on...
<p>Reduced datasets were used to investigate the impact of model-choice on branch lengths. <b>A</b>....
<p>Results from the simulation study analyzing the effects of branch length on accuracy of tree infe...
<p>Branch lengths estimated for cpDNA-9 (A) and mammalian-mtDNA (B) are compared among models. The a...
FIGURE S5. The effects of selection on species tree estimates for the moderate species tree simulati...
FIGURE S1. The effects of species-specific positive selection on effective population size and dive...
A) population phylogenetic tree inferred from the pairwise FST values (see also S3 Fig) superimposed...
<p>Left: relationship between root-to-tip variance and tree length for simulated (<i>clock</i> and <...
FIGURE S2. The effects of species-specific positive selection on effective population size and dive...
<p>A: mean branch lengths in trees from dynamic networks with a pathogen with duration of infectious...
<p>For setting and (), we modified all 100 birth-death trees (A) and all 100 coalescent trees (B) ...
Evolution leaves heterogeneous patterns of nucleotide variation across the genome, with different lo...
<p>In each panel, the tree on the left is colored by species prevalence (black to orange), while the...
FIGURE S6. The effects of selection on species tree estimates for the deep species tree simulations....