Results of linear models testing the effect of tree branch length to the root extracted from a treemix population phylogeny on the load (πN/πS,panel A) and different metrics of selection efficacy B: relationship between ωNA and tree branch length; C: relationship between ωA and tree branch length; D: relationship between α and tree branch length. See text for a definition of each metrics). Sample sites are coloured by region. The blue line represents the value of the regression line. In all panels each point represents a sampling site and is coloured according to the region in which it was sampled. Displayed is the adjusted R2 along with its p-value. (TIF)</p
Many fundamental features of a sampling program are determined by the heterogeneity of the object un...
<p>For setting and (), we modified all 100 birth-death trees (A) and all 100 coalescent trees (B) ...
Effect of tree size on the nMGL. (A) Scatterplots and OLS regression slopes for spectral density pro...
A: relationship between ωNA and tree branch length; B: relationship between ωA and tree branch lengt...
These provide tests of the relationship between branch length of the population phylogenies based on...
FIGURE S5. The effects of selection on species tree estimates for the moderate species tree simulati...
<p>Results from the simulation study analyzing the effects of branch length on accuracy of tree infe...
<p>Reduced datasets were used to investigate the impact of model-choice on branch lengths. <b>A</b>....
<p>In each panel, the tree on the left is colored by species prevalence (black to orange), while the...
A) population phylogenetic tree inferred from the pairwise FST values (see also S3 Fig) superimposed...
<p>Left: relationship between root-to-tip variance and tree length for simulated (<i>clock</i> and <...
FIGURE S6. The effects of selection on species tree estimates for the deep species tree simulations....
<p>Branch lengths estimated for cpDNA-9 (A) and mammalian-mtDNA (B) are compared among models. The a...
FIGURE S1. The effects of species-specific positive selection on effective population size and dive...
Left: PCA plot of tree features from phylogenetic trees simulated on different networks: random (Erd...
Many fundamental features of a sampling program are determined by the heterogeneity of the object un...
<p>For setting and (), we modified all 100 birth-death trees (A) and all 100 coalescent trees (B) ...
Effect of tree size on the nMGL. (A) Scatterplots and OLS regression slopes for spectral density pro...
A: relationship between ωNA and tree branch length; B: relationship between ωA and tree branch lengt...
These provide tests of the relationship between branch length of the population phylogenies based on...
FIGURE S5. The effects of selection on species tree estimates for the moderate species tree simulati...
<p>Results from the simulation study analyzing the effects of branch length on accuracy of tree infe...
<p>Reduced datasets were used to investigate the impact of model-choice on branch lengths. <b>A</b>....
<p>In each panel, the tree on the left is colored by species prevalence (black to orange), while the...
A) population phylogenetic tree inferred from the pairwise FST values (see also S3 Fig) superimposed...
<p>Left: relationship between root-to-tip variance and tree length for simulated (<i>clock</i> and <...
FIGURE S6. The effects of selection on species tree estimates for the deep species tree simulations....
<p>Branch lengths estimated for cpDNA-9 (A) and mammalian-mtDNA (B) are compared among models. The a...
FIGURE S1. The effects of species-specific positive selection on effective population size and dive...
Left: PCA plot of tree features from phylogenetic trees simulated on different networks: random (Erd...
Many fundamental features of a sampling program are determined by the heterogeneity of the object un...
<p>For setting and (), we modified all 100 birth-death trees (A) and all 100 coalescent trees (B) ...
Effect of tree size on the nMGL. (A) Scatterplots and OLS regression slopes for spectral density pro...