Mean and variances from screens: Statistical analysis of batches assayed for each genotype in the functional screens, as used for plots in Figs 3A, 3D, 4B, 4F and 5C.

Comparison between total (A) and mean (B) number of genotypes per allelic family between microscopy and submicroscopy groups.

Rokhaya Sane (4330237)
Cheikh Talla (667352)
Babacar Diouf (366059)
Fatoumata Diene Sarr (2836526)
Nafissatou Diagne (737748)
Joseph Faye (280000)
Abdoulaye Badiane (340408)
Pape Mbacké Sembène (6635537)
Cheikh Sokhna (84117)
Aissatou Toure-Balde (4330240)
Makhtar Niang (252570)

April 2019

Comparison between total (A) and mean (B) number of genotypes per allelic family between microscopy ...

False Positive Rates for simulated data for various workflows.

Natasha A. Karp (107980)
Anneliese O. Speak (390201)
Jacqueline K. White (119191)
David J. Adams (119198)
Martin Hrabé de Angelis (10007)
Yann Hérault (76220)
Richard F. Mott (107982)

October 2014

Shown are FPRs under the null hypothesis of no phenotypic effect, estimated by resampling simulat...

Results of overall analysis of variance for yield of F1 hybrids, parental lines and control cultivars.

Laurencja Szała (6612743)
Zygmunt Kaczmarek (2918390)
Wiesława Popławska (6612746)
Alina Liersch (6612749)
Marek Wójtowicz (6612752)
Marcin Matuszczak (6612755)
Zdzisław R. Biliński (6612758)
Katarzyna Sosnowska (6612761)
Michał Stefanowicz (6612764)
Teresa Cegielska-Taras (6612767)

April 2019

Results of overall analysis of variance for yield of F1 hybrids, parental lines and control cultivar...

Example of the exploration of batch effects.

Mohamed Mounir (6293589)
Marta Lucchetta (2826497)
Tiago C. Silva (6425471)
Catharina Olsen (3586811)
Gianluca Bontempi (3517634)
Xi Chen (35903)
Houtan Noushmehr (174733)
Antonio Colaprico (3517631)
Elena Papaleo (44359)

March 2019

Four plots generated by ComBat to correct for batch effects. For the left panel plots, the red lines...

The commercial kit used is the main contributor of variance.

Krista E. van Meijgaarden (366786)
Bhagwati Khatri (103876)
Steven G. Smith (256794)
Anne M. F. H. Drittij (5714564)
Roelof A. de Paus (368289)
Jelle J. Goeman (123389)
Mei M. Ho (5714567)
Hazel M. Dockrell (255469)
Helen McShane (80704)
Simone A. Joosten (193144)
Tom H. M. Ottenhoff (160303)

September 2018

(A)Left panel shows the concentration measured for all cytokines and chemokines using the spiked sam...

Comparing features between treatments.

Sahar Gelfman (5806952)
Quanli Wang (449196)
Yi-Fan Lu (5806955)
Diana Hall (270530)
Christopher D. Bostick (1982506)
Ryan Dhindsa (5806958)
Matt Halvorsen (791179)
K. Melodi McSweeney (5806961)
Ellese Cotterill (5806964)
Tom Edinburgh (5806967)
Michael A. Beaumont (5806970)
Wayne N. Frankel (115593)
Slavé Petrovski (192969)
Andrew S. Allen (419124)
Michael J. Boland (5806973)
David B. Goldstein (194563)
Stephen J. Eglen (255644)

October 2018

In panels A-C, treatment refers to genotype (heterozygous, +/- and homozygous, -/-). In panels D and...

Summary statistics of mean genetic variation and bottleneck tests across sampled populations.

Bibek Yumnam (659576)
Yadvendradev V. Jhala (103336)
Qamar Qureshi (485379)
Jesus E. Maldonado (108026)
Rajesh Gopal (659577)
Swati Saini (659578)
Y. Srinivas (556924)
Robert C. Fleischer (221849)

November 2014

Summary statistics of mean genetic variation and bottleneck tests across sampled populations.</p

Data points from screens: Data for individual flies from the batches assayed for each genotype in the functional screens as used to generate S2 Data.

João J. Rocha (16799016)
Satish Arcot Jayaram (16799019)
Tim J. Stevens (5577866)
Nadine Muschalik (16799022)
Rajen D. Shah (16799025)
Sahar Emran (16799028)
Cristina Robles (16799031)
Matthew Freeman (42630)
Sean Munro (33986)

August 2023

Data points from screens: Data for individual flies from the batches assayed for each genotype in th...

Mean, range and coefficient of variation (CV %) of genotypes for eight quantitative traits.

Naflath T. V. (14227497)
Rajendra Prasad S. (14227500)
Ravikumar R. L. (14227503)

December 2022

Mean, range and coefficient of variation (CV %) of genotypes for eight quantitative traits.</p

Mean values ± standard deviation of the viable counts obtained on MacConkey agar for each sample type.

Cristiana Garofalo (5985989)
Cristiana Cesaro (17743293)
Vesna Milanović (5985983)
Luca Belleggia (9160371)
Tullia Matricardi (17743296)
Andrea Osimani (5985980)
Lucia Aquilanti (5986007)
Federica Cardinali (5985986)
Giorgia Rampanti (17743299)
Serena Simoni (5445434)
Carla Vignaroli (407543)
Andrea Brenciani (5445425)
Marina Pasquini (6288863)
Maria Federica Trombetta (6288875)

January 2024

Mean values ± standard deviation of the viable counts obtained on MacConkey agar for each sample typ...

Comparison of means of three traits among the major 4 protein types.

Li Lu (68660)
Wenhao Yan (160979)
Weiya Xue (111249)
Di Shao (160981)
Yongzhong Xing (34641)

May 2012

The first line indicates the main 4 protein types. SD, standard deviation; N, number of cultivars...

Analysis of the effect of genotype on rE median, rE dispersion, and sFAi dispersion.

Tomas Navarro (17873548)
Antonella Iannini (17873551)
Marta Neto (17873554)
Alejandro Campoy-Lopez (17873557)
Javier Muñoz-García (192464)
Paulo S. Pereira (3610130)
Saúl Ares (148738)
Fernando Casares (176599)

January 2024

First block shows each genotype’s effect on the rE median, their p.values, and the predicted median ...

Box plots of the allelic combinations mean (Plus shape), 25th and 75th percentile (colored box), median (center line in box), range of phenotype (in Whiskers).

Suraj Gurung (636776)
Sujan Mamidi (630183)
J. Michael Bonman (393364)
Mai Xiong (636777)
Gina Brown-Guedira (636778)
Tika B. Adhikari (636779)

September 2014

Box plots of the allelic combinations mean (Plus shape), 25th and 75th percentile (col...

Analysis of variance table for net blotch severity (NB), days to heading (DH) and plant height (PH) and heritabilities in the AxL mapping population.

Ronja Wonneberger (3966173)
Andrea Ficke (3966170)
Morten Lillemo (3109854)

April 2017

Analysis of variance table for net blotch severity (NB), days to heading (DH) and plant height (P...

Variability of experimental methods.

Timothy A. Crombie (4377244)
Sayran Saber (4377250)
Ayush Shekhar Saxena (4377241)
Robyn Egan (5873648)
Charles F. Baer (251999)

October 2018

Left panel: boxplots of the frequency of wild-type individuals ("pfoc") for the three methods. Right...

Comparison between total (A) and mean (B) number of genotypes per allelic family between microscopy and submicroscopy groups.

Rokhaya Sane (4330237)
Cheikh Talla (667352)
Babacar Diouf (366059)
Fatoumata Diene Sarr (2836526)
Nafissatou Diagne (737748)
Joseph Faye (280000)
Abdoulaye Badiane (340408)
Pape Mbacké Sembène (6635537)
Cheikh Sokhna (84117)
Aissatou Toure-Balde (4330240)
Makhtar Niang (252570)

April 2019

Comparison between total (A) and mean (B) number of genotypes per allelic family between microscopy ...

False Positive Rates for simulated data for various workflows.

Natasha A. Karp (107980)
Anneliese O. Speak (390201)
Jacqueline K. White (119191)
David J. Adams (119198)
Martin Hrabé de Angelis (10007)
Yann Hérault (76220)
Richard F. Mott (107982)

October 2014

Shown are FPRs under the null hypothesis of no phenotypic effect, estimated by resampling simulat...

Results of overall analysis of variance for yield of F1 hybrids, parental lines and control cultivars.

Laurencja Szała (6612743)
Zygmunt Kaczmarek (2918390)
Wiesława Popławska (6612746)
Alina Liersch (6612749)
Marek Wójtowicz (6612752)
Marcin Matuszczak (6612755)
Zdzisław R. Biliński (6612758)
Katarzyna Sosnowska (6612761)
Michał Stefanowicz (6612764)
Teresa Cegielska-Taras (6612767)

April 2019

Results of overall analysis of variance for yield of F1 hybrids, parental lines and control cultivar...

Example of the exploration of batch effects.

Mohamed Mounir (6293589)
Marta Lucchetta (2826497)
Tiago C. Silva (6425471)
Catharina Olsen (3586811)
Gianluca Bontempi (3517634)
Xi Chen (35903)
Houtan Noushmehr (174733)
Antonio Colaprico (3517631)
Elena Papaleo (44359)

March 2019

Four plots generated by ComBat to correct for batch effects. For the left panel plots, the red lines...

The commercial kit used is the main contributor of variance.

Krista E. van Meijgaarden (366786)
Bhagwati Khatri (103876)
Steven G. Smith (256794)
Anne M. F. H. Drittij (5714564)
Roelof A. de Paus (368289)
Jelle J. Goeman (123389)
Mei M. Ho (5714567)
Hazel M. Dockrell (255469)
Helen McShane (80704)
Simone A. Joosten (193144)
Tom H. M. Ottenhoff (160303)

September 2018

(A)Left panel shows the concentration measured for all cytokines and chemokines using the spiked sam...

Comparing features between treatments.

Sahar Gelfman (5806952)
Quanli Wang (449196)
Yi-Fan Lu (5806955)
Diana Hall (270530)
Christopher D. Bostick (1982506)
Ryan Dhindsa (5806958)
Matt Halvorsen (791179)
K. Melodi McSweeney (5806961)
Ellese Cotterill (5806964)
Tom Edinburgh (5806967)
Michael A. Beaumont (5806970)
Wayne N. Frankel (115593)
Slavé Petrovski (192969)
Andrew S. Allen (419124)
Michael J. Boland (5806973)
David B. Goldstein (194563)
Stephen J. Eglen (255644)

October 2018

In panels A-C, treatment refers to genotype (heterozygous, +/- and homozygous, -/-). In panels D and...

Summary statistics of mean genetic variation and bottleneck tests across sampled populations.

Bibek Yumnam (659576)
Yadvendradev V. Jhala (103336)
Qamar Qureshi (485379)
Jesus E. Maldonado (108026)
Rajesh Gopal (659577)
Swati Saini (659578)
Y. Srinivas (556924)
Robert C. Fleischer (221849)

November 2014

Summary statistics of mean genetic variation and bottleneck tests across sampled populations.</p

Data points from screens: Data for individual flies from the batches assayed for each genotype in the functional screens as used to generate S2 Data.

João J. Rocha (16799016)
Satish Arcot Jayaram (16799019)
Tim J. Stevens (5577866)
Nadine Muschalik (16799022)
Rajen D. Shah (16799025)
Sahar Emran (16799028)
Cristina Robles (16799031)
Matthew Freeman (42630)
Sean Munro (33986)

August 2023

Data points from screens: Data for individual flies from the batches assayed for each genotype in th...

Mean, range and coefficient of variation (CV %) of genotypes for eight quantitative traits.

Naflath T. V. (14227497)
Rajendra Prasad S. (14227500)
Ravikumar R. L. (14227503)

December 2022

Mean, range and coefficient of variation (CV %) of genotypes for eight quantitative traits.</p

Mean values ± standard deviation of the viable counts obtained on MacConkey agar for each sample type.

Cristiana Garofalo (5985989)
Cristiana Cesaro (17743293)
Vesna Milanović (5985983)
Luca Belleggia (9160371)
Tullia Matricardi (17743296)
Andrea Osimani (5985980)
Lucia Aquilanti (5986007)
Federica Cardinali (5985986)
Giorgia Rampanti (17743299)
Serena Simoni (5445434)
Carla Vignaroli (407543)
Andrea Brenciani (5445425)
Marina Pasquini (6288863)
Maria Federica Trombetta (6288875)

January 2024

Mean values ± standard deviation of the viable counts obtained on MacConkey agar for each sample typ...

Comparison of means of three traits among the major 4 protein types.

Li Lu (68660)
Wenhao Yan (160979)
Weiya Xue (111249)
Di Shao (160981)
Yongzhong Xing (34641)

May 2012

The first line indicates the main 4 protein types. SD, standard deviation; N, number of cultivars...

Analysis of the effect of genotype on rE median, rE dispersion, and sFAi dispersion.

Tomas Navarro (17873548)
Antonella Iannini (17873551)
Marta Neto (17873554)
Alejandro Campoy-Lopez (17873557)
Javier Muñoz-García (192464)
Paulo S. Pereira (3610130)
Saúl Ares (148738)
Fernando Casares (176599)

January 2024

First block shows each genotype’s effect on the rE median, their p.values, and the predicted median ...

Box plots of the allelic combinations mean (Plus shape), 25th and 75th percentile (colored box), median (center line in box), range of phenotype (in Whiskers).

Suraj Gurung (636776)
Sujan Mamidi (630183)
J. Michael Bonman (393364)
Mai Xiong (636777)
Gina Brown-Guedira (636778)
Tika B. Adhikari (636779)

September 2014

Box plots of the allelic combinations mean (Plus shape), 25th and 75th percentile (col...

Analysis of variance table for net blotch severity (NB), days to heading (DH) and plant height (PH) and heritabilities in the AxL mapping population.

Ronja Wonneberger (3966173)
Andrea Ficke (3966170)
Morten Lillemo (3109854)

April 2017

Analysis of variance table for net blotch severity (NB), days to heading (DH) and plant height (P...

Variability of experimental methods.

Timothy A. Crombie (4377244)
Sayran Saber (4377250)
Ayush Shekhar Saxena (4377241)
Robyn Egan (5873648)
Charles F. Baer (251999)

October 2018

Left panel: boxplots of the frequency of wild-type individuals ("pfoc") for the three methods. Right...

Comparison between total (A) and mean (B) number of genotypes per allelic family between microscopy and submicroscopy groups.

Rokhaya Sane (4330237)
Cheikh Talla (667352)
Babacar Diouf (366059)
Fatoumata Diene Sarr (2836526)
Nafissatou Diagne (737748)
Joseph Faye (280000)
Abdoulaye Badiane (340408)
Pape Mbacké Sembène (6635537)
Cheikh Sokhna (84117)
Aissatou Toure-Balde (4330240)
Makhtar Niang (252570)

April 2019

Comparison between total (A) and mean (B) number of genotypes per allelic family between microscopy ...

False Positive Rates for simulated data for various workflows.

Natasha A. Karp (107980)
Anneliese O. Speak (390201)
Jacqueline K. White (119191)
David J. Adams (119198)
Martin Hrabé de Angelis (10007)
Yann Hérault (76220)
Richard F. Mott (107982)

October 2014

Shown are FPRs under the null hypothesis of no phenotypic effect, estimated by resampling simulat...

Results of overall analysis of variance for yield of F1 hybrids, parental lines and control cultivars.

Laurencja Szała (6612743)
Zygmunt Kaczmarek (2918390)
Wiesława Popławska (6612746)
Alina Liersch (6612749)
Marek Wójtowicz (6612752)
Marcin Matuszczak (6612755)
Zdzisław R. Biliński (6612758)
Katarzyna Sosnowska (6612761)
Michał Stefanowicz (6612764)
Teresa Cegielska-Taras (6612767)

April 2019

Results of overall analysis of variance for yield of F1 hybrids, parental lines and control cultivar...

Mean and variances from screens: Statistical analysis of batches assayed for each genotype in the functional screens, as used for plots in Figs 3A, 3D, 4B, 4F and 5C.

Abstract

Extracted data

Mean and variances from screens: Statistical analysis of batches assayed for each genotype in the functional screens, as used for plots in Figs 3A, 3D, 4B, 4F and 5C.

Abstract

Extracted data

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