Fig 3 -

Shi-Wen Liu (671014)
Jian-Xiong Li (3524780)
Long Zou (6205643)
Xiao-Qing Liu (28848)
Gang Xu (219455)
Ying Xiong (245379)
Zhong-Er Long (16799238)

Publication date

August 2023

DOI

10.1371/journal.pntd.0011540.g003

Abstract

(A) Phylogenetic tree of orthohantavirus based on partial S segment (634 nt-855 nt), (B) Phylogenetic tree of orthohantavirus based on partial S segment (1070 nt-1173 nt). The blue font indicates the virus strains recovered from human specimens in the Yichun region; the red font indicates the virus strains recovered from rodent specimens in the Yichun region. The black font indicates the virus strains (S4 Table) from GenBank. Numbers at nodes indicate bootstrap values and only >70% are shown. The scale bars indicate 0.02 substitutions per sit.</p

Extracted data

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Data Protection

Fig 3 -

Shi-Wen Liu (671014)
Jian-Xiong Li (3524780)
Long Zou (6205643)
Xiao-Qing Liu (28848)
Gang Xu (219455)
Ying Xiong (245379)
Zhong-Er Long (16799238)

Open link

Publication date

August 2023

DOI

10.1371/journal.pntd.0011540.g003

Abstract

Extracted data

Athanasios Kossyvakis (731141)
Ying Tao (469347)
Xiaoyan Lu (226200)
Vasiliki Pogka (731142)
Sotirios Tsiodras (217944)
Mary Emmanouil (731143)
Andreas F. Mentis (280757)
Suxiang Tong (469343)
Dean D. Erdman (236544)
Antonios Antoniadis (731144)

April 2015

Midpoint-rooted phylogenetic trees of the full-length nucleocapsid (N) and spike (S) open-reading...

Phylogenetic analyses inferred to open reading frame (ORF) sequences of severe fever with thrombocytopenia syndrome virus (SFTSV) tripartite genomes.

Jingyeong Lee (10789614)
Kyungmin Park (2263549)
Jongwoo Kim (1308468)
Seung-Ho Lee (201595)
Geum-Young Lee (9504858)
Seungchan Cho (589551)
Heung-Chul Kim (318729)
Terry A. Klein (9547302)
Jeong-Ah Kim (81814)
Jeewan Choi (13775581)
Juwan Park (13775584)
Dong-Hyun Song (9504864)
Se Hun Gu (9355445)
Hyeongseok Yun (6894023)
Jung-Eun Kim (83763)
Daesang Lee (795016)
Gyeung Haeng Hur (13775587)
Seong Tae Jeong (2837207)
Il-Ung Hwang (13775590)
Won-Keun Kim (3966437)
Jin-Won Song (262176)

September 2022

The phylogenetic trees were generated using maximum likelihood methods in MEGA7 with bootstrap 1,000...

The phylogenetic tree constructed by alignment of the complete 2025-nt nucleotide sequence of ORF2 using Mega 4 software.

Wen Zhang (7555)
Shixing Yang (368885)
Liping Ren (228832)
Quan Shen (37564)
Li Cui (37567)
Kezhang Fan (368886)
Fen Huang (368887)
Yanjun Kang (368888)
Tongling Shan (353279)
Jianzhong Wei (368889)
Haifeng Xiu (368890)
Yifang Lou (368891)
Junfeng Liu (306749)
Zhibiao Yang (368892)
Jianguo Zhu (206510)
Xiuguo Hua (37568)

February 2013

Virus strains included the three isolates in this study and the referenced genotype 4 isolates. P...

Phylogenetic tree of orthohantavirus based on partial M segment (2002 nt–2301 nt).

Shi-Wen Liu (671014)
Jian-Xiong Li (3524780)
Long Zou (6205643)
Xiao-Qing Liu (28848)
Gang Xu (219455)
Ying Xiong (245379)
Zhong-Er Long (16799238)

August 2023

The blue font indicates the virus strain recovered from human specimens in the Yichun region; the re...

Phylogenetic tree of orthohantavirus based on the CDS region (1290 nt) of S segment.

Shi-Wen Liu (671014)
Jian-Xiong Li (3524780)
Long Zou (6205643)
Xiao-Qing Liu (28848)
Gang Xu (219455)
Ying Xiong (245379)
Zhong-Er Long (16799238)

August 2023

The blue font indicates the virus strain recovered from human specimens in the Yichun region; the re...

Phylogenetic trees of five particular segments of isolate Bat/342/08.

Claudia Kohl (142196)
René Lesnik (142197)
Annika Brinkmann (142200)
Arnt Ebinger (142204)
Aleksandar Radonić (142207)
Andreas Nitsche (12987)
Kristin Mühldorfer (142211)
Gudrun Wibbelt (131571)
Andreas Kurth (34946)

August 2012

Bayesian analysis of T3/Bat/Germany/342/08 using free-end alignments of nucleotide sequences of f...

Phylogenetic trees showing the phylogenetic positions of the Miyazaki-Bali/2007 strain and other orthoreovirus strains based on deduced amino acid sequence of the sigma C protein (A), major inner capsid protein (B), sigma NS protein (C), and major outer capsid protein (D) listed in Table 1.

Atsushi Yamanaka (340147)
Akira Iwakiri (542649)
Tomoki Yoshikawa (367816)
Kouji Sakai (498530)
Harpal Singh (273486)
Daisuke Himeji (542650)
Ikuo Kikuchi (542651)
Akira Ueda (542652)
Seigo Yamamoto (542653)
Miho Miura (542654)
Yoko Shioyama (542655)
Kimiko Kawano (513348)
Tokiko Nagaishi (542656)
Minako Saito (542657)
Masumi Minomo (542658)
Naoyasu Iwamoto (542659)
Yoshio Hidaka (542660)
Hirotoshi Sohma (542661)
Takeshi Kobayashi (4712)
Yuta Kanai (114415)
Takehiro Kawagishi (542662)
Noriyo Nagata (389752)
Shuetsu Fukushi (542663)
Tetsuya Mizutani (58974)
Hideki Tani (357985)
Satoshi Taniguchi (542664)
Aiko Fukuma (354021)
Masayuki Shimojima (241787)
Ichiro Kurane (181627)
Tsutomu Kageyama (542665)
Takato Odagiri (247568)
Masayuki Saijo (324701)
Shigeru Morikawa (58979)

March 2014

Bootstrap values for each node are shown by the robustness of the tree. Miyazaki-Bali/2007, the s...

Phylogenetic tree (Fitch-Margoliash) of hantaviruses based on the complete coding region of the S segment

Angelina Plyusnina (87335)
Juha Laakkonen (87336)
Jukka Niemimaa (87337)
Kirill Nemirov (87338)
Galina Muruyeva (87339)
Boshikto Pohodiev (87340)
Åke Lundkvist (87341)
Antti Vaheri (87342)
Heikki Henttonen (87343)
Olli Vapalahti (87344)
Alexander Plyusnin (87345)

December 2011

Copyright information:Taken from "Genetic analysis of hantaviruses carried by and r...

Phylogenetic trees of orthoreoviruses based on partial amino acid sequence of the cell attachment or sigma C protein (aa 1–324).

Kaw Bing Chua (181623)
Kenny Voon (341896)
Gary Crameri (145854)
Hui Siu Tan (375824)
Juliana Rosli (375826)
Jennifer A. McEachern (368711)
Sivagami Suluraju (375828)
Meng Yu (145821)
Lin-Fa Wang (145863)

February 2013

GenBank accession number for each sequence is given in brackets next to the abbreviated virus nam...

Additional file 1: of Identification of novel reassortant mammalian orthoreoviruses from bats in Slovenia

Tina Naglič (5712098)
Danijela Rihtarič (5712101)
Peter Hostnik (387239)
Nataša Toplak (664298)
Simon Koren (5712104)
Urška Kuhar (5712107)
Urška Jamnikar-Ciglenečki (5712110)
Denis Kutnjak (5712113)
Andrej Steyer (3171327)

September 2018

Phylogenetic trees of mammalian orthoreovirus L, M and S genome segments ORFs. Black dots (●), label...

Phylogenetic analysis of sequences of representative Chinese measles viruses, compared to the WHO reference sequences.

Yan Zhang (8098)
Songtao Xu (169593)
Huiling Wang (169598)
Zhen Zhu (104773)
Yixin Ji (169605)
Chunyu Liu (9855)
Xiaojie Zhang (136081)
Liwei Sun (109973)
Jianhui Zhou (141895)
Peishan Lu (169611)
Ying Hu (14950)
Daxing Feng (169613)
Zhenying Zhang (169615)
Changyin Wang (148691)
Xueqiang Fang (148703)
Huanying Zheng (169617)
Leng Liu (169619)
Xiaodong Sun (166163)
Wei Tang (53470)
Yan Wang (15435)
Yan Liu (25061)
Hui Gao (169623)
Hong Tian (169626)
Jiangtao Ma (169629)
Suyi Gu (169631)
Shuang Wang (46453)
Yan Feng (128912)
Fang Bo (169635)
Jianfeng Liu (122580)
Yuan Si (169638)
Shujie Zhou (169640)
Yuyan Ma (169643)
Shengwei Wu (169646)
Shunde Zhou (169649)
Fangcai Li (169653)
Zhengrong Ding (169657)
Zhaohui Yang (169660)
Paul A. Rota (169664)
David Featherstone (169668)
Youngmee Jee (169673)
William J. Bellini (169676)
Wenbo Xu (148718)

April 2012

These trees are based on the WHO standard sequence window within the N gene. Panel A. Phylogeneti...

Tanglegram comparing the phylogenies of hantaviruses and their bat, insectivore, and rodent hosts.

Wen-Ping Guo (280775)
Xian-Dan Lin (280776)
Wen Wang (6570)
Jun-Hua Tian (280777)
Mei-Li Cong (280778)
Hai-Lin Zhang (280779)
Miao-Ruo Wang (280780)
Run-Hong Zhou (280781)
Jian-Bo Wang (116873)
Ming-Hui Li (280782)
Jianguo Xu (12151)
Edward C. Holmes (35215)
Yong-Zhen Zhang (280783)

February 2013

The host tree on the left was based on cytochrome b gene sequences, while the hantavirus tree on ...

Phylogenetic analyses of flaviviruses.

Ziyan Liu (5856587)
Liang Li (46069)
Wenbo Xu (148718)
Yongxu Yuan (14290463)
Xiaojie Liang (11899943)
Li Zhang (8200)
Zhengkai Wei (4055512)
Liyan Sui (8549736)
Yinghua Zhao (619439)
Yanyan Cui (495645)
Qing Yin (422598)
Dajun Li (702626)
Qianxue Li (4391899)
Zhijun Hou (10332902)
Feng Wei (426184)
Quan Liu (486219)
Zedong Wang (2617439)

December 2022

Phylogenetic trees were constructed based on the RdRp sequence of representative viruses in the fami...

Phylogenetic analyses of the MERS-CoV S and N ORFs.

Athanasios Kossyvakis (731141)
Ying Tao (469347)
Xiaoyan Lu (226200)
Vasiliki Pogka (731142)
Sotirios Tsiodras (217944)
Mary Emmanouil (731143)
Andreas F. Mentis (280757)
Suxiang Tong (469343)
Dean D. Erdman (236544)
Antonios Antoniadis (731144)

April 2015

Midpoint-rooted phylogenetic trees of the full-length nucleocapsid (N) and spike (S) open-reading...

Phylogenetic analyses inferred to open reading frame (ORF) sequences of severe fever with thrombocytopenia syndrome virus (SFTSV) tripartite genomes.

Jingyeong Lee (10789614)
Kyungmin Park (2263549)
Jongwoo Kim (1308468)
Seung-Ho Lee (201595)
Geum-Young Lee (9504858)
Seungchan Cho (589551)
Heung-Chul Kim (318729)
Terry A. Klein (9547302)
Jeong-Ah Kim (81814)
Jeewan Choi (13775581)
Juwan Park (13775584)
Dong-Hyun Song (9504864)
Se Hun Gu (9355445)
Hyeongseok Yun (6894023)
Jung-Eun Kim (83763)
Daesang Lee (795016)
Gyeung Haeng Hur (13775587)
Seong Tae Jeong (2837207)
Il-Ung Hwang (13775590)
Won-Keun Kim (3966437)
Jin-Won Song (262176)

September 2022

The phylogenetic trees were generated using maximum likelihood methods in MEGA7 with bootstrap 1,000...

The phylogenetic tree constructed by alignment of the complete 2025-nt nucleotide sequence of ORF2 using Mega 4 software.

Wen Zhang (7555)
Shixing Yang (368885)
Liping Ren (228832)
Quan Shen (37564)
Li Cui (37567)
Kezhang Fan (368886)
Fen Huang (368887)
Yanjun Kang (368888)
Tongling Shan (353279)
Jianzhong Wei (368889)
Haifeng Xiu (368890)
Yifang Lou (368891)
Junfeng Liu (306749)
Zhibiao Yang (368892)
Jianguo Zhu (206510)
Xiuguo Hua (37568)

February 2013

Virus strains included the three isolates in this study and the referenced genotype 4 isolates. P...

Phylogenetic trees of five particular segments of isolate Bat/342/08.

Claudia Kohl (142196)
René Lesnik (142197)
Annika Brinkmann (142200)
Arnt Ebinger (142204)
Aleksandar Radonić (142207)
Andreas Nitsche (12987)
Kristin Mühldorfer (142211)
Gudrun Wibbelt (131571)
Andreas Kurth (34946)

August 2012

Bayesian analysis of T3/Bat/Germany/342/08 using free-end alignments of nucleotide sequences of f...

Atsushi Yamanaka (340147)
Akira Iwakiri (542649)
Tomoki Yoshikawa (367816)
Kouji Sakai (498530)
Harpal Singh (273486)
Daisuke Himeji (542650)
Ikuo Kikuchi (542651)
Akira Ueda (542652)
Seigo Yamamoto (542653)
Miho Miura (542654)
Yoko Shioyama (542655)
Kimiko Kawano (513348)
Tokiko Nagaishi (542656)
Minako Saito (542657)
Masumi Minomo (542658)
Naoyasu Iwamoto (542659)
Yoshio Hidaka (542660)
Hirotoshi Sohma (542661)
Takeshi Kobayashi (4712)
Yuta Kanai (114415)
Takehiro Kawagishi (542662)
Noriyo Nagata (389752)
Shuetsu Fukushi (542663)
Tetsuya Mizutani (58974)
Hideki Tani (357985)
Satoshi Taniguchi (542664)
Aiko Fukuma (354021)
Masayuki Shimojima (241787)
Ichiro Kurane (181627)
Tsutomu Kageyama (542665)
Takato Odagiri (247568)
Masayuki Saijo (324701)
Shigeru Morikawa (58979)

March 2014

Bootstrap values for each node are shown by the robustness of the tree. Miyazaki-Bali/2007, the s...

Phylogenetic tree (Fitch-Margoliash) of hantaviruses based on the complete coding region of the S segment

Angelina Plyusnina (87335)
Juha Laakkonen (87336)
Jukka Niemimaa (87337)
Kirill Nemirov (87338)
Galina Muruyeva (87339)
Boshikto Pohodiev (87340)
Åke Lundkvist (87341)
Antti Vaheri (87342)
Heikki Henttonen (87343)
Olli Vapalahti (87344)
Alexander Plyusnin (87345)

December 2011

Copyright information:Taken from "Genetic analysis of hantaviruses carried by and r...

Phylogenetic trees of orthoreoviruses based on partial amino acid sequence of the cell attachment or sigma C protein (aa 1–324).

Kaw Bing Chua (181623)
Kenny Voon (341896)
Gary Crameri (145854)
Hui Siu Tan (375824)
Juliana Rosli (375826)
Jennifer A. McEachern (368711)
Sivagami Suluraju (375828)
Meng Yu (145821)
Lin-Fa Wang (145863)

February 2013

GenBank accession number for each sequence is given in brackets next to the abbreviated virus nam...

Additional file 1: of Identification of novel reassortant mammalian orthoreoviruses from bats in Slovenia

Tina Naglič (5712098)
Danijela Rihtarič (5712101)
Peter Hostnik (387239)
Nataša Toplak (664298)
Simon Koren (5712104)
Urška Kuhar (5712107)
Urška Jamnikar-Ciglenečki (5712110)
Denis Kutnjak (5712113)
Andrej Steyer (3171327)

September 2018

Phylogenetic trees of mammalian orthoreovirus L, M and S genome segments ORFs. Black dots (●), label...

Phylogenetic analysis of sequences of representative Chinese measles viruses, compared to the WHO reference sequences.

Yan Zhang (8098)
Songtao Xu (169593)
Huiling Wang (169598)
Zhen Zhu (104773)
Yixin Ji (169605)
Chunyu Liu (9855)
Xiaojie Zhang (136081)
Liwei Sun (109973)
Jianhui Zhou (141895)
Peishan Lu (169611)
Ying Hu (14950)
Daxing Feng (169613)
Zhenying Zhang (169615)
Changyin Wang (148691)
Xueqiang Fang (148703)
Huanying Zheng (169617)
Leng Liu (169619)
Xiaodong Sun (166163)
Wei Tang (53470)
Yan Wang (15435)
Yan Liu (25061)
Hui Gao (169623)
Hong Tian (169626)
Jiangtao Ma (169629)
Suyi Gu (169631)
Shuang Wang (46453)
Yan Feng (128912)
Fang Bo (169635)
Jianfeng Liu (122580)
Yuan Si (169638)
Shujie Zhou (169640)
Yuyan Ma (169643)
Shengwei Wu (169646)
Shunde Zhou (169649)
Fangcai Li (169653)
Zhengrong Ding (169657)
Zhaohui Yang (169660)
Paul A. Rota (169664)
David Featherstone (169668)
Youngmee Jee (169673)
William J. Bellini (169676)
Wenbo Xu (148718)

April 2012

These trees are based on the WHO standard sequence window within the N gene. Panel A. Phylogeneti...

Tanglegram comparing the phylogenies of hantaviruses and their bat, insectivore, and rodent hosts.

Wen-Ping Guo (280775)
Xian-Dan Lin (280776)
Wen Wang (6570)
Jun-Hua Tian (280777)
Mei-Li Cong (280778)
Hai-Lin Zhang (280779)
Miao-Ruo Wang (280780)
Run-Hong Zhou (280781)
Jian-Bo Wang (116873)
Ming-Hui Li (280782)
Jianguo Xu (12151)
Edward C. Holmes (35215)
Yong-Zhen Zhang (280783)

February 2013

The host tree on the left was based on cytochrome b gene sequences, while the hantavirus tree on ...

Phylogenetic analyses of flaviviruses.

Ziyan Liu (5856587)
Liang Li (46069)
Wenbo Xu (148718)
Yongxu Yuan (14290463)
Xiaojie Liang (11899943)
Li Zhang (8200)
Zhengkai Wei (4055512)
Liyan Sui (8549736)
Yinghua Zhao (619439)
Yanyan Cui (495645)
Qing Yin (422598)
Dajun Li (702626)
Qianxue Li (4391899)
Zhijun Hou (10332902)
Feng Wei (426184)
Quan Liu (486219)
Zedong Wang (2617439)

December 2022

Phylogenetic trees were constructed based on the RdRp sequence of representative viruses in the fami...

Phylogenetic analyses of the MERS-CoV S and N ORFs.

Athanasios Kossyvakis (731141)
Ying Tao (469347)
Xiaoyan Lu (226200)
Vasiliki Pogka (731142)
Sotirios Tsiodras (217944)
Mary Emmanouil (731143)
Andreas F. Mentis (280757)
Suxiang Tong (469343)
Dean D. Erdman (236544)
Antonios Antoniadis (731144)

April 2015

Midpoint-rooted phylogenetic trees of the full-length nucleocapsid (N) and spike (S) open-reading...

Phylogenetic analyses inferred to open reading frame (ORF) sequences of severe fever with thrombocytopenia syndrome virus (SFTSV) tripartite genomes.

Jingyeong Lee (10789614)
Kyungmin Park (2263549)
Jongwoo Kim (1308468)
Seung-Ho Lee (201595)
Geum-Young Lee (9504858)
Seungchan Cho (589551)
Heung-Chul Kim (318729)
Terry A. Klein (9547302)
Jeong-Ah Kim (81814)
Jeewan Choi (13775581)
Juwan Park (13775584)
Dong-Hyun Song (9504864)
Se Hun Gu (9355445)
Hyeongseok Yun (6894023)
Jung-Eun Kim (83763)
Daesang Lee (795016)
Gyeung Haeng Hur (13775587)
Seong Tae Jeong (2837207)
Il-Ung Hwang (13775590)
Won-Keun Kim (3966437)
Jin-Won Song (262176)

September 2022

The phylogenetic trees were generated using maximum likelihood methods in MEGA7 with bootstrap 1,000...

The phylogenetic tree constructed by alignment of the complete 2025-nt nucleotide sequence of ORF2 using Mega 4 software.

Wen Zhang (7555)
Shixing Yang (368885)
Liping Ren (228832)
Quan Shen (37564)
Li Cui (37567)
Kezhang Fan (368886)
Fen Huang (368887)
Yanjun Kang (368888)
Tongling Shan (353279)
Jianzhong Wei (368889)
Haifeng Xiu (368890)
Yifang Lou (368891)
Junfeng Liu (306749)
Zhibiao Yang (368892)
Jianguo Zhu (206510)
Xiuguo Hua (37568)

February 2013

Virus strains included the three isolates in this study and the referenced genotype 4 isolates. P...

Fig 3 -

Abstract

Extracted data

Fig 3 -

Abstract

Extracted data

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