Matching statistics were introduced to solve the approximate string matching problem, which is a recurrent subroutine in bioinformatics applications. In 2010, Ohlebusch et al. [SPIRE 2010] proposed a time and space efficient algorithm for computing matching statistics which relies on some components of a compressed suffix tree-notably, the longest common prefix (LCP) array. In this paper, we show how their algorithm can be generalized from strings to Wheeler deterministic finite automata. Most importantly, we introduce a notion of LCP array for Wheeler automata, thus establishing a first clear step towards extending (compressed) suffix tree functionalities to labeled graphs
Prefix-free parsing (PFP) was introduced by Boucher et al. (2019) as a preprocessing step to ease th...
International audienceRecently new algorithms appeared for updating the Burrows-Wheeler transform or...
Wheeler DFAs (WDFAs) are a sub-class of finite-state automata which is playing an important role in ...
Matching statistics were introduced to solve the approximate string matching problem, which is a rec...
Indexing strings via prefix (or suffix) sorting is, arguably, one of the most successful algorithmic...
Indexing strings via prefix (or suffix) sorting is, arguably, one of the most successful algorithmic...
When augmented with the longest common prefix (LCP) array and some other structures, the suffix arra...
AbstractSuffix automata and factor automata are efficient data structures for representing the full ...
This doctoral dissertation presents a range of results concerning efficient algorithms and data stru...
The longest common prefix array is a very advantageous data structure that, combined with the suffix...
Abstract. We address the problem of string matching in the special case where the pattern is very lo...
The suffix array, a space efficient alternative to the suffix tree, is an important data structure f...
We introduce a new algorithm for constructing the generalized suffix array of a collection of highly...
Space-efficient data structures are an active field of research that has found many applications in ...
[[abstract]]Let T be a text of length n and P be a pattern of length m, both strings over a fixed fi...
Prefix-free parsing (PFP) was introduced by Boucher et al. (2019) as a preprocessing step to ease th...
International audienceRecently new algorithms appeared for updating the Burrows-Wheeler transform or...
Wheeler DFAs (WDFAs) are a sub-class of finite-state automata which is playing an important role in ...
Matching statistics were introduced to solve the approximate string matching problem, which is a rec...
Indexing strings via prefix (or suffix) sorting is, arguably, one of the most successful algorithmic...
Indexing strings via prefix (or suffix) sorting is, arguably, one of the most successful algorithmic...
When augmented with the longest common prefix (LCP) array and some other structures, the suffix arra...
AbstractSuffix automata and factor automata are efficient data structures for representing the full ...
This doctoral dissertation presents a range of results concerning efficient algorithms and data stru...
The longest common prefix array is a very advantageous data structure that, combined with the suffix...
Abstract. We address the problem of string matching in the special case where the pattern is very lo...
The suffix array, a space efficient alternative to the suffix tree, is an important data structure f...
We introduce a new algorithm for constructing the generalized suffix array of a collection of highly...
Space-efficient data structures are an active field of research that has found many applications in ...
[[abstract]]Let T be a text of length n and P be a pattern of length m, both strings over a fixed fi...
Prefix-free parsing (PFP) was introduced by Boucher et al. (2019) as a preprocessing step to ease th...
International audienceRecently new algorithms appeared for updating the Burrows-Wheeler transform or...
Wheeler DFAs (WDFAs) are a sub-class of finite-state automata which is playing an important role in ...