Proportion of SNP calls (genotypes) per host SNP haplotype and per transmission intensity.

A) Single major allele calls; B) Double allele calls (DACs); C) Single minor allele calls; D) Missing allele calls. Each SNP call proportion was calculated using the low-, moderate-, and high-transmission setting simulations (S1 and S2 Tables). The column panels show the proportions for specific true MOI values. The dark and light green colors indicate the proportion of calls made without and with a measurement model, respectively (Fig 2). For each category, the horizontal central solid line represents the median, the diamond represents the mean, the box represents the interquartile range (IQR) from the 25th to 75th centiles, the whiskers indicate the most extreme data point, which is no more than 1.5 times the interquartile range from the box, and the dots show the outliers, i.e., the points beyond the whiskers. (EPS)