Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence
- Dyson, Zoe Anne
- Malau, Elisheba
- Horwood, Paul F
- Ford, Rebecca
- Siba, Valentine
- Yoannes, Mition
- Pomat, William
- Passey, Megan
- Judd, Louise M
- Ingle, Danielle J
- Williamson, Deborah A
- Dougan, Gordon
- Greenhill, Andrew R
- Holt, Kathryn E
Publication date
March 2022
DOI Publisher
Public Library of Science (PLoS)Abstract
This table details regions filtered from PNG genotype 2.1.7 alignment, where repetitive regions were identified using the ncumer command in MUMmer (v3.23) and integrated prophage sequences detected using the PHAge Search Tool Enhanced Release. Further recombination were removed with Gubbins (v2.3.2)
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