Regions masked as repetitive in the reference genome v2.1

Identified repetitive elements and genes in genomic reads.

Margaret Staton (4676)
Teodora Best (839591)
Sudhir Khodwekar (839592)
Sandra Owusu (839593)
Tao Xu (3537)
Yi Xu (131145)
Tara Jennings (839594)
Richard Cronn (563080)
A. Kathiravetpilla Arumuganathan (839595)
Mark Coggeshall (839596)
Oliver Gailing (86418)
Haiying Liang (137985)
Jeanne Romero-Severson (128326)
Scott Schlarbaum (839597)
John E. Carlson (137993)

January 2016

The percent of reconstructed fragments with sequence similarity to known plant repetitive element...

Genomic and cytogenetic characterization of phaseolus and glycine

Hans, Christian Sayre

January 2013

Science is currently entering the genome era, where genome sequencing has become routine, rapid, and...

Additional file 1: Figure S1. of Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

OphĂŠlie Jouffroy (3427721)
Surya Saha (119245)
Lukas Mueller (539227)
Hadi Quesneville (4280)
Florian Maumus (548161)

August 2016

Repeats composition of the genome of S. lycopersicum. The different families of repeats have been de...

Regions masked as repetitive in the reference genome v2.1

Lobaton, Juan D.
Miller, Tamara
Gil, Juanita
Ariza, Daniel
De La Hoz, Juan Fernando
Soler, Alvaro
Beebe, Steve
Duitama, Jorge
Gepts, Paul
Raatz, Bodo

March 2018

Catalog of regions marked as repetitive in the softmasked version of the bean reference genome v2.1....

Merging of regions identified as repetitive in the reference genome v2.1

Lobaton, Juan D.
Miller, Tamara
Gil, Juanita
Ariza, Daniel
De La Hoz, Juan Fernando
Soler, Alvaro
Beebe, Steve
Duitama, Jorge
Gepts, Paul
Raatz, Bodo

March 2018

Catalog of regions marked as repetitive in the softmasked version of the bean reference genome v2.1,...

Merging of regions identified as repetitive in the reference genome v2.1

Juan D. Lobaton (5032190)
Tamara Miller (5032199)
Juanita Gil (5032202)
Daniel Ariza (5032196)
Juan Fernando De La Hoz (5032205)
Alvaro Soler (123012)
Steve Beebe (5032193)
Jorge Duitama (418597)
Paul Gepts (372584)
Bodo Raatz (3452510)

March 2018

Catalog of regions marked as repetitive in the softmasked version of the bean reference genome v2.1,...

Regions from the reference genome v2.1 called repetitive based on reads with non-unique alignments

Lobaton, Juan D.
Miller, Tamara
Gil, Juanita
Ariza, Daniel
De La Hoz, Juan Fernando
Soler, Alvaro
Beebe, Steve
Duitama, Jorge
Gepts, Paul
Raatz, Bodo

March 2018

Catalog of regions marked as repetitive by NGSEP, based on Illumina reads from G19833 with non-uniqu...

Cottus rhenanus reference genome, masked with repetitive elements used for masking appended

Dennenmoser, Stefan
Sedlazeck, Fritz
Schatz, Michael
Altmüller, Janine
Zytnicki, Matthias
Nolte, Arne W.

November 2018

A Cottus rhenanus reference genome assembly (fasta format) masked with a de novo assembly of repetit...

Repetitive DNA in the pea (L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and -3

Jiří Macas (84231)
Pavel Neumann (84232)
Alice Navrátilová (84233)

December 2011

Copyright information:Taken from "Repetitive DNA in the pea (L.) genome: comprehens...

Schema and characteristics of repeat regions across genome.

Kirsten M. Johnson (610583)
Cenny Taslim (484958)
Ranajeet S. Saund (4559746)
Stephen L. Lessnick (272137)

November 2017

(A) Schema of repeat regions. Regions with only one type of motif are called pure repeat r...

Percent of the genome identified as repetitive elements by RepeatMasker.

Daren C. Card (626284)
Drew R. Schield (626285)
Jacobo Reyes-Velasco (626286)
Matthew K. Fujita (123478)
Audra L. Andrew (626287)
Sara J. Oyler-McCance (184490)
Jennifer A. Fike (184495)
Diana F. Tomback (161663)
Robert P. Ruggiero (615498)
Todd A. Castoe (184476)

September 2014

Histograms of percent repetitive content for all assemblies and the reference genomes of both spe...

Repetitive DNA in the pea (L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and -0

Jiří Macas (84231)
Pavel Neumann (84232)
Alice Navrátilová (84233)

December 2011

Copyright information:Taken from "Repetitive DNA in the pea (L.) genome: comprehens...

Repetitive DNA in the pea (L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and -4

Jiří Macas (84231)
Pavel Neumann (84232)
Alice Navrátilová (84233)

December 2011

Copyright information:Taken from "Repetitive DNA in the pea (L.) genome: comprehens...

Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence

Dyson, Zoe Anne
Malau, Elisheba
Horwood, Paul F
Ford, Rebecca
Siba, Valentine
Yoannes, Mition
Pomat, William
Passey, Megan
Judd, Louise M
Ingle, Danielle J
Williamson, Deborah A
Dougan, Gordon
Greenhill, Andrew R
Holt, Kathryn E

March 2022

This table details regions filtered from PNG genotype 2.1.7 alignment, where repetitive regions were...

Paroedura picta genome assembly (repeat-masked)

Phyloinformatics Lab in RIKEN Kobe (4815111)

May 2018

Repeat elements and low-complexity regions annotated by RepeatMasker were soft-masked

Identified repetitive elements and genes in genomic reads.

Margaret Staton (4676)
Teodora Best (839591)
Sudhir Khodwekar (839592)
Sandra Owusu (839593)
Tao Xu (3537)
Yi Xu (131145)
Tara Jennings (839594)
Richard Cronn (563080)
A. Kathiravetpilla Arumuganathan (839595)
Mark Coggeshall (839596)
Oliver Gailing (86418)
Haiying Liang (137985)
Jeanne Romero-Severson (128326)
Scott Schlarbaum (839597)
John E. Carlson (137993)

January 2016

The percent of reconstructed fragments with sequence similarity to known plant repetitive element...

Genomic and cytogenetic characterization of phaseolus and glycine

Hans, Christian Sayre

January 2013

Science is currently entering the genome era, where genome sequencing has become routine, rapid, and...

Additional file 1: Figure S1. of Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

OphĂŠlie Jouffroy (3427721)
Surya Saha (119245)
Lukas Mueller (539227)
Hadi Quesneville (4280)
Florian Maumus (548161)

August 2016

Repeats composition of the genome of S. lycopersicum. The different families of repeats have been de...

Regions masked as repetitive in the reference genome v2.1

Lobaton, Juan D.
Miller, Tamara
Gil, Juanita
Ariza, Daniel
De La Hoz, Juan Fernando
Soler, Alvaro
Beebe, Steve
Duitama, Jorge
Gepts, Paul
Raatz, Bodo

March 2018

Catalog of regions marked as repetitive in the softmasked version of the bean reference genome v2.1....

Merging of regions identified as repetitive in the reference genome v2.1

Lobaton, Juan D.
Miller, Tamara
Gil, Juanita
Ariza, Daniel
De La Hoz, Juan Fernando
Soler, Alvaro
Beebe, Steve
Duitama, Jorge
Gepts, Paul
Raatz, Bodo

March 2018

Catalog of regions marked as repetitive in the softmasked version of the bean reference genome v2.1,...

Merging of regions identified as repetitive in the reference genome v2.1

Juan D. Lobaton (5032190)
Tamara Miller (5032199)
Juanita Gil (5032202)
Daniel Ariza (5032196)
Juan Fernando De La Hoz (5032205)
Alvaro Soler (123012)
Steve Beebe (5032193)
Jorge Duitama (418597)
Paul Gepts (372584)
Bodo Raatz (3452510)

March 2018

Catalog of regions marked as repetitive in the softmasked version of the bean reference genome v2.1,...

Regions from the reference genome v2.1 called repetitive based on reads with non-unique alignments

Lobaton, Juan D.
Miller, Tamara
Gil, Juanita
Ariza, Daniel
De La Hoz, Juan Fernando
Soler, Alvaro
Beebe, Steve
Duitama, Jorge
Gepts, Paul
Raatz, Bodo

March 2018

Catalog of regions marked as repetitive by NGSEP, based on Illumina reads from G19833 with non-uniqu...

Cottus rhenanus reference genome, masked with repetitive elements used for masking appended

Dennenmoser, Stefan
Sedlazeck, Fritz
Schatz, Michael
Altmüller, Janine
Zytnicki, Matthias
Nolte, Arne W.

November 2018

A Cottus rhenanus reference genome assembly (fasta format) masked with a de novo assembly of repetit...

Repetitive DNA in the pea (L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and -3

Jiří Macas (84231)
Pavel Neumann (84232)
Alice Navrátilová (84233)

December 2011

Copyright information:Taken from "Repetitive DNA in the pea (L.) genome: comprehens...

Schema and characteristics of repeat regions across genome.

Kirsten M. Johnson (610583)
Cenny Taslim (484958)
Ranajeet S. Saund (4559746)
Stephen L. Lessnick (272137)

November 2017

(A) Schema of repeat regions. Regions with only one type of motif are called pure repeat r...

Percent of the genome identified as repetitive elements by RepeatMasker.

Daren C. Card (626284)
Drew R. Schield (626285)
Jacobo Reyes-Velasco (626286)
Matthew K. Fujita (123478)
Audra L. Andrew (626287)
Sara J. Oyler-McCance (184490)
Jennifer A. Fike (184495)
Diana F. Tomback (161663)
Robert P. Ruggiero (615498)
Todd A. Castoe (184476)

September 2014

Histograms of percent repetitive content for all assemblies and the reference genomes of both spe...

Repetitive DNA in the pea (L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and -0

Jiří Macas (84231)
Pavel Neumann (84232)
Alice Navrátilová (84233)

December 2011

Copyright information:Taken from "Repetitive DNA in the pea (L.) genome: comprehens...

Repetitive DNA in the pea (L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and -4

Jiří Macas (84231)
Pavel Neumann (84232)
Alice Navrátilová (84233)

December 2011

Copyright information:Taken from "Repetitive DNA in the pea (L.) genome: comprehens...

Excluded repeat and phage regions in PNG MDUST348 2.1.7.2 completed reference sequence

Dyson, Zoe Anne
Malau, Elisheba
Horwood, Paul F
Ford, Rebecca
Siba, Valentine
Yoannes, Mition
Pomat, William
Passey, Megan
Judd, Louise M
Ingle, Danielle J
Williamson, Deborah A
Dougan, Gordon
Greenhill, Andrew R
Holt, Kathryn E

March 2022

This table details regions filtered from PNG genotype 2.1.7 alignment, where repetitive regions were...

Paroedura picta genome assembly (repeat-masked)

Phyloinformatics Lab in RIKEN Kobe (4815111)

May 2018

Repeat elements and low-complexity regions annotated by RepeatMasker were soft-masked

Identified repetitive elements and genes in genomic reads.

Margaret Staton (4676)
Teodora Best (839591)
Sudhir Khodwekar (839592)
Sandra Owusu (839593)
Tao Xu (3537)
Yi Xu (131145)
Tara Jennings (839594)
Richard Cronn (563080)
A. Kathiravetpilla Arumuganathan (839595)
Mark Coggeshall (839596)
Oliver Gailing (86418)
Haiying Liang (137985)
Jeanne Romero-Severson (128326)
Scott Schlarbaum (839597)
John E. Carlson (137993)

January 2016

The percent of reconstructed fragments with sequence similarity to known plant repetitive element...

Genomic and cytogenetic characterization of phaseolus and glycine

Hans, Christian Sayre

January 2013

Science is currently entering the genome era, where genome sequencing has become routine, rapid, and...

Additional file 1: Figure S1. of Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

OphĂŠlie Jouffroy (3427721)
Surya Saha (119245)
Lukas Mueller (539227)
Hadi Quesneville (4280)
Florian Maumus (548161)

August 2016

Repeats composition of the genome of S. lycopersicum. The different families of repeats have been de...

Regions masked as repetitive in the reference genome v2.1

Abstract

Extracted data

Regions masked as repetitive in the reference genome v2.1

Abstract

Extracted data

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