Additional file 3. Microglial markers and DEGs in microglial Louvain clusters. a tSNE plot of microglia showing all eleven Louvain clusters. b Violin plots of top five most abundant differentially expressed genes in each microglial cluster, if applicable. c Violin plots illustrating the per-cluster expression of microglia-specific and homeostatic microglial markers
Additional file 8. Nanostring GeoMx workflow and ROI segmenting. a Schematic detailing the workflow ...
Table S1 List of conditions used in microglia stimulus panel. Table containing stimulus identity, su...
Table S3 Lists of genes in each module. Each column shows the full list of genes in a given module. ...
Additional file 4. Sample and disease condition contribution to microglial clusters. a Side-by-side ...
Additional file 11. DEP gene expression in microglia snRNA-Seq. a Volcano plot of significant abunda...
Additional file 14: Table S3. Top Highly Differentially Expressed Genes in Microglia Subpopulations
Additional file 5. Immune modulation and inflammation marker expression differs by disease condition...
Additional file 7. Top PDEGs highlight diversity of pseudotime trajectories. Scatter plots of cells ...
Additional file 2. Overlap of DEGs in RE relative to FCD and CTRL. a,b Venn diagrams showing the num...
Additional file 6. Pseudotime trajectory analysis. a UMAP plot of microglia showing all eleven Louva...
Additional file 1. QC and cell typing for snRNA-seq data. a, b tSNE plots showing raw RNA and UMI co...
Additional file 13: Table S2. Differentially Expressed Genes in Microglia, RE vs FCD
Additional file 10. CD45+ ROI segment protein expression. Heatmap showing protein expression of 42 p...
Additional file 9. IBA1+ ROI segment protein expression. Heatmap showing protein expression of 42 pr...
Additional file 12: Table S1. Differentially Expressed Genes in Microglia, RE vs CTRL
Additional file 8. Nanostring GeoMx workflow and ROI segmenting. a Schematic detailing the workflow ...
Table S1 List of conditions used in microglia stimulus panel. Table containing stimulus identity, su...
Table S3 Lists of genes in each module. Each column shows the full list of genes in a given module. ...
Additional file 4. Sample and disease condition contribution to microglial clusters. a Side-by-side ...
Additional file 11. DEP gene expression in microglia snRNA-Seq. a Volcano plot of significant abunda...
Additional file 14: Table S3. Top Highly Differentially Expressed Genes in Microglia Subpopulations
Additional file 5. Immune modulation and inflammation marker expression differs by disease condition...
Additional file 7. Top PDEGs highlight diversity of pseudotime trajectories. Scatter plots of cells ...
Additional file 2. Overlap of DEGs in RE relative to FCD and CTRL. a,b Venn diagrams showing the num...
Additional file 6. Pseudotime trajectory analysis. a UMAP plot of microglia showing all eleven Louva...
Additional file 1. QC and cell typing for snRNA-seq data. a, b tSNE plots showing raw RNA and UMI co...
Additional file 13: Table S2. Differentially Expressed Genes in Microglia, RE vs FCD
Additional file 10. CD45+ ROI segment protein expression. Heatmap showing protein expression of 42 p...
Additional file 9. IBA1+ ROI segment protein expression. Heatmap showing protein expression of 42 pr...
Additional file 12: Table S1. Differentially Expressed Genes in Microglia, RE vs CTRL
Additional file 8. Nanostring GeoMx workflow and ROI segmenting. a Schematic detailing the workflow ...
Table S1 List of conditions used in microglia stimulus panel. Table containing stimulus identity, su...
Table S3 Lists of genes in each module. Each column shows the full list of genes in a given module. ...