This work examines the problem of learning the topology of a network from the samples of a diffusion process evolving at the network nodes, under the restriction that a limited fraction thereof is probed (partial observability). We provide the following main contributions. Given an estimator of the combination matrix (i.e., the matrix that quantifies the pairwise interaction between nodes), we introduce the notion of identifiability gap, a minimum separation between the entries of the estimated matrix that is critical to enable discrimination between connected and unconnected node pairs. Then we focus on the popular Granger estimator. First, we prove that this matrix estimator, followed by a universal clustering algorithm inspired by the k-...