We examine genetic differentiation of Lesser Flamingo Phoeniconaias minor, a colonial and vagrant waterbird confined to four populations in the Old World, in order to provide a first insight into geographic connections between the two major breeding populations. Sixty-nine flamingos, sampled from Lake Bogoria (Kenya) and Rann of Kachchh (Gujarat, India), were analysed by sequencing mitochondrial markers (cytb and ND2) and genotyping six nuclear loci. We globally found low levels of polymorphism, revealing congruent patterns of starburst radiation around the most frequent haplotypes. We estimated that average demographic expansion of the African and Indian populations was around 141 000 years ago. Analyses of nuclear DNA highlighted lack of ...