We only tested the six listed traits for pathway enrichment as these traits possess significant or close to significant genes under the coherence test. The coherent case corresponds to the right (R) tail, the anti-coherent case to the left (L) tail. The number of genes in the pathway is given in the fourth column. We tested against the 32284 gene sets of MSigDB 7.4. We list Bonferroni significant (p −7) pathways and close to significant pathways.</p
[[abstract]]Pathway analysis has become popular as a secondary analysis strategy for genome-wide ass...
The column D indicates the direction of the test with + for coherent and − for anti-coherent.</p
<p>For phenotype i and we counted how many of the genes associated with it fall within each of 198 K...
We tested against the 32284 gene sets of MSigDB 7.4. We list Bonferroni significant pathways (p −7) ...
Data points correspond to genes. The dotted red line marks a Bonferroni significance threshold of 3....
Each data point corresponds to a gene. The dotted red line marks a Bonferroni significance threshold...
Data points correspond to genes. The dotted red line marks a Bonferroni significance threshold of 1....
<p>The ‘count’ column shows the number of significant genes identified within a pathway. Significant...
<p>Bar heights represent the number of pathways found to be significant after Bonferroni-correction....
<p>Top 10 gene groups ranked by pathway-phenoseq p-value (Bonferroni corrected for 536 tests).</p
<p>Significant pathways and biological processes overrepresented in differentially expressed genes b...
<p>P: P value was identified using Fisher’s Exact test and corrected by Benjamini Hochberg multiple ...
<p>Genes are sorted in ascending order of interaction p-value within outcome-exposure strata.</p>a<p...
[[abstract]]Pathway analysis has become popular as a secondary analysis strategy for genome-wide ass...
<p>In panels A and B, genes (on the left) and pathways (on the right) were analyzed for association ...
[[abstract]]Pathway analysis has become popular as a secondary analysis strategy for genome-wide ass...
The column D indicates the direction of the test with + for coherent and − for anti-coherent.</p
<p>For phenotype i and we counted how many of the genes associated with it fall within each of 198 K...
We tested against the 32284 gene sets of MSigDB 7.4. We list Bonferroni significant pathways (p −7) ...
Data points correspond to genes. The dotted red line marks a Bonferroni significance threshold of 3....
Each data point corresponds to a gene. The dotted red line marks a Bonferroni significance threshold...
Data points correspond to genes. The dotted red line marks a Bonferroni significance threshold of 1....
<p>The ‘count’ column shows the number of significant genes identified within a pathway. Significant...
<p>Bar heights represent the number of pathways found to be significant after Bonferroni-correction....
<p>Top 10 gene groups ranked by pathway-phenoseq p-value (Bonferroni corrected for 536 tests).</p
<p>Significant pathways and biological processes overrepresented in differentially expressed genes b...
<p>P: P value was identified using Fisher’s Exact test and corrected by Benjamini Hochberg multiple ...
<p>Genes are sorted in ascending order of interaction p-value within outcome-exposure strata.</p>a<p...
[[abstract]]Pathway analysis has become popular as a secondary analysis strategy for genome-wide ass...
<p>In panels A and B, genes (on the left) and pathways (on the right) were analyzed for association ...
[[abstract]]Pathway analysis has become popular as a secondary analysis strategy for genome-wide ass...
The column D indicates the direction of the test with + for coherent and − for anti-coherent.</p
<p>For phenotype i and we counted how many of the genes associated with it fall within each of 198 K...