Additional file 3: Supplemental Table 2. Summary table of all significant MaAsLin results. All MaAsLin results from 16S rRNA gene sequencing with q-values for significant taxa which met our predetermined threshold for significance (q<0.20). Mixed effects linear models using arcsine transform on relative abundances were used to determine significance. p-values were adjusted for multiple comparisons using the Benjamini-Hochberg false discovery rate (FDR) method with FDR set at <0.20. (XLS 224 kb
Figure S3. Stacked bar plot of dominant phyla. Marginal and representative sections from each infant...
Figure S5. Correlations between continuous phenotypic parameters and species profile in the entire c...
Table S1. MaAsLin analysis of all available metadata categories to determine the significant associa...
Additional file 2: Supplemental Table 1. Demographics. Demographics of the infants from the GMAP coh...
Additional file 1: Supplemental Figure 1. Overall longitudinal microbiome composition. (A) Compositi...
Table S2. Relative abundance of significant genera as determined by MaAsLin analysis, per section of...
Additional file 3: Supplemental Figure 2. Random Forest classification (with 10-fold cross-validatio...
Additional file 1: Supplementary fig. 1. Differences in gut bacterial genera composition between mig...
Genera co-occurrence analyses. Spearman rank co-efficient analyses of relative abundance of a given ...
Number of 16S rRNA and wide genome sequences generated per sample. This table shows the number of ra...
LDA scores of the most discriminant bacterial taxa identified by LEfSe. Positive and negative LDA sc...
Figure S3. Comparison of gut microbial compositional and functional structure between enterotypes. (...
File includes Figure A, B, and C. Figure A. Rarefaction curve. Number of observed species identified...
Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...
Linear discriminant analysis effect size of different sample cohorts â faecal inoculum, pectin and...
Figure S3. Stacked bar plot of dominant phyla. Marginal and representative sections from each infant...
Figure S5. Correlations between continuous phenotypic parameters and species profile in the entire c...
Table S1. MaAsLin analysis of all available metadata categories to determine the significant associa...
Additional file 2: Supplemental Table 1. Demographics. Demographics of the infants from the GMAP coh...
Additional file 1: Supplemental Figure 1. Overall longitudinal microbiome composition. (A) Compositi...
Table S2. Relative abundance of significant genera as determined by MaAsLin analysis, per section of...
Additional file 3: Supplemental Figure 2. Random Forest classification (with 10-fold cross-validatio...
Additional file 1: Supplementary fig. 1. Differences in gut bacterial genera composition between mig...
Genera co-occurrence analyses. Spearman rank co-efficient analyses of relative abundance of a given ...
Number of 16S rRNA and wide genome sequences generated per sample. This table shows the number of ra...
LDA scores of the most discriminant bacterial taxa identified by LEfSe. Positive and negative LDA sc...
Figure S3. Comparison of gut microbial compositional and functional structure between enterotypes. (...
File includes Figure A, B, and C. Figure A. Rarefaction curve. Number of observed species identified...
Heatmap of bacterial abundance in all study specimens. Each vertical line represents the bacterial c...
Linear discriminant analysis effect size of different sample cohorts â faecal inoculum, pectin and...
Figure S3. Stacked bar plot of dominant phyla. Marginal and representative sections from each infant...
Figure S5. Correlations between continuous phenotypic parameters and species profile in the entire c...
Table S1. MaAsLin analysis of all available metadata categories to determine the significant associa...