Additional file 4: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

Christopher Stewart (3608402)
Roxana Fatemizadeh (6423359)
Pamela Parsons (6423362)
Christopher Lamb (6423365)
Deborah Shady (6423368)
Joseph Petrosino (39790)
Amy Hair (6423371)

Publication date

March 2019

DOI

10.6084/m9.figshare.7802351.v1

Abstract

Table S2. Relative abundance of significant genera as determined by MaAsLin analysis, per section of tissue. (XLSX 33 kb

Extracted data

We use cookies to provide a better user experience.

Data Protection

Additional file 4: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

Christopher Stewart (3608402)
Roxana Fatemizadeh (6423359)
Pamela Parsons (6423362)
Christopher Lamb (6423365)
Deborah Shady (6423368)
Joseph Petrosino (39790)
Amy Hair (6423371)

Open link

Publication date

March 2019

DOI

10.6084/m9.figshare.7802351.v1

Abstract

Table S2. Relative abundance of significant genera as determined by MaAsLin analysis, per section of tissue. (XLSX 33 kb

Extracted data

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 3: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

Christopher Stewart (3608402)
Roxana Fatemizadeh (6423359)
Pamela Parsons (6423362)
Christopher Lamb (6423365)
Deborah Shady (6423368)
Joseph Petrosino (39790)
Amy Hair (6423371)

March 2019

Table S1. MaAsLin analysis of all available metadata categories to determine the significant associa...

Additional file 5: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

Christopher Stewart (3608402)
Roxana Fatemizadeh (6423359)
Pamela Parsons (6423362)
Christopher Lamb (6423365)
Deborah Shady (6423368)
Joseph Petrosino (39790)
Amy Hair (6423371)

March 2019

Figure S3. Stacked bar plot of dominant phyla. Marginal and representative sections from each infant...

Additional file 2: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

Christopher Stewart (3608402)
Roxana Fatemizadeh (6423359)
Pamela Parsons (6423362)
Christopher Lamb (6423365)
Deborah Shady (6423368)
Joseph Petrosino (39790)
Amy Hair (6423371)

March 2019

Figure S2. Stacked bar plot of dominant genera. Marginal and representative sections from each infan...

Additional file 1: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

Christopher Stewart (3608402)
Roxana Fatemizadeh (6423359)
Pamela Parsons (6423362)
Christopher Lamb (6423365)
Deborah Shady (6423368)
Joseph Petrosino (39790)
Amy Hair (6423371)

March 2019

Figure S1. Comparison of resulting microbiota profiles following DNA extraction with either xylene o...

Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

Christopher J. Stewart
Roxana Fatemizadeh
Pamela Parsons
Christopher A. Lamb
Deborah A. Shady
Joseph F. Petrosino
Amy B. Hair

March 2019

Abstract Background Necrotising enterocolitis (NEC) is a common cause of death in preterm infants an...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 2: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S2. Analysis of relative abundance of PolyFermS commensal bacteria genera. Relative abundance...

Additional file 8: of Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

Mohan Pammi (3822313)
Julia Cope (103124)
Phillip Tarr (3416615)
Barbara Warner (3822322)
Ardythe Morrow (3822325)
Volker Mai (288569)
Katherine Gregory (3608483)
J. Kroll (3427700)
Valerie McMurtry (3822319)
Michael Ferris (347884)
Lars Engstrand (48331)
Helene Lilja (3822316)
Emily Hollister (3548546)
James Versalovic (158351)
Josef Neu (200821)

March 2017

Comparison of microbiota profiles in NEC and control infants subgrouped by diet. Observed species (o...

Additional file 5: of Metabolomic signatures distinguish the impact of formula carbohydrates on disease outcome in a preterm piglet model of NEC

Lee Call (5424620)
Barbara Stoll (631755)
Berthe Oosterloo (631754)
Nadim Ajami (3526169)
Fariha Sheikh (752802)
Anja Wittke (631761)
Rosaline Waworuntu (5424617)
Brian Berg (631760)
Joseph Petrosino (39790)
Oluyinka Olutoye (5424611)
Douglas Burrin (5424614)

June 2018

Relative abundance of the seven most abundant genera in intestinal mucosal tissue, comparing across ...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Christopher Stewart (3608402)
Roxana Fatemizadeh (6423359)
Pamela Parsons (6423362)
Christopher Lamb (6423365)
Deborah Shady (6423368)
Joseph Petrosino (39790)
Amy Hair (6423371)

March 2019

Table S1. MaAsLin analysis of all available metadata categories to determine the significant associa...

Christopher Stewart (3608402)
Roxana Fatemizadeh (6423359)
Pamela Parsons (6423362)
Christopher Lamb (6423365)
Deborah Shady (6423368)
Joseph Petrosino (39790)
Amy Hair (6423371)

March 2019

Figure S3. Stacked bar plot of dominant phyla. Marginal and representative sections from each infant...

Christopher Stewart (3608402)
Roxana Fatemizadeh (6423359)
Pamela Parsons (6423362)
Christopher Lamb (6423365)
Deborah Shady (6423368)
Joseph Petrosino (39790)
Amy Hair (6423371)

March 2019

Figure S2. Stacked bar plot of dominant genera. Marginal and representative sections from each infan...

Christopher Stewart (3608402)
Roxana Fatemizadeh (6423359)
Pamela Parsons (6423362)
Christopher Lamb (6423365)
Deborah Shady (6423368)
Joseph Petrosino (39790)
Amy Hair (6423371)

March 2019

Figure S1. Comparison of resulting microbiota profiles following DNA extraction with either xylene o...

Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

Christopher J. Stewart
Roxana Fatemizadeh
Pamela Parsons
Christopher A. Lamb
Deborah A. Shady
Joseph F. Petrosino
Amy B. Hair

March 2019

Abstract Background Necrotising enterocolitis (NEC) is a common cause of death in preterm infants an...

Additional file 1: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S1. Analysis of relative abundance of PolyFermS commensal bacteria phyla. Relative abundance ...

Additional file 2: of Species-specific enhancement of enterohemorrhagic E. coli pathogenesis mediated by microbiome metabolites

Alessio Tovaglieri (5039909)
Alexandra Sontheimer-Phelps (6486695)
Annelies Geirnaert (579263)
Rachelle Prantil-Baun (6486698)
Diogo Camacho (6486701)
David Chou (427894)
Sasan Jalili-Firoozinezhad (6486704)
TomĂĄs Wouters (6486707)
Magdalena Kasendra (706294)
Michael Super (1641175)
Mark Cartwright (1436668)
Camilla Richmond (6486710)
David Breault (3441422)
Christophe Lacroix (35954)
Donald Ingber (6486713)

March 2019

Figure S2. Analysis of relative abundance of PolyFermS commensal bacteria genera. Relative abundance...

Additional file 8: of Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis

Mohan Pammi (3822313)
Julia Cope (103124)
Phillip Tarr (3416615)
Barbara Warner (3822322)
Ardythe Morrow (3822325)
Volker Mai (288569)
Katherine Gregory (3608483)
J. Kroll (3427700)
Valerie McMurtry (3822319)
Michael Ferris (347884)
Lars Engstrand (48331)
Helene Lilja (3822316)
Emily Hollister (3548546)
James Versalovic (158351)
Josef Neu (200821)

March 2017

Comparison of microbiota profiles in NEC and control infants subgrouped by diet. Observed species (o...

Additional file 5: of Metabolomic signatures distinguish the impact of formula carbohydrates on disease outcome in a preterm piglet model of NEC

Lee Call (5424620)
Barbara Stoll (631755)
Berthe Oosterloo (631754)
Nadim Ajami (3526169)
Fariha Sheikh (752802)
Anja Wittke (631761)
Rosaline Waworuntu (5424617)
Brian Berg (631760)
Joseph Petrosino (39790)
Oluyinka Olutoye (5424611)
Douglas Burrin (5424614)

June 2018

Relative abundance of the seven most abundant genera in intestinal mucosal tissue, comparing across ...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 10: Figure S9. of Temporal bacterial and metabolic development of the preterm gut reveals specific signatures in health and disease

Stewart, Christopher J.
Embleton, Nicholas D.
Marrs, Emma C L
Smith, Daniel P.
Nelson, Andrew
Abdulkadir, Bashir
Skeath, Tom
Petrosino, Joseph F.
Perry, John D.
Berrington, Janet E.
Cummings, Stephen P.
Embleton, Nicholas
Teesside University
National Horizons Centre
Teesside University

January 2016

Pulse field gel electrophoresis (PFGE) of two E. coli isolates from NEC patients and 4 E. coli isola...

Additional file 4: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

Abstract

Extracted data

Additional file 4: of Using formalin fixed paraffin embedded tissue to characterize the preterm gut microbiota in necrotising enterocolitis and spontaneous isolated perforation using marginal and diseased tissue

Abstract

Extracted data

Related items

Related items