How should monetary policy deal with endogenous stock and bond market fluctuations? This dissertation focuses on the interaction among uncertainty arising from financial markets, risk- premium (and term-premium), and the business cycle. The main objective is to study various effective monetary policy responses for stabilization purposes.The first chapter offers a non-linear version of the standard New-Keynesian framework, in which I provide an illustration of how the consideration of the first-order effects of endogenous and time-varying aggregate risks changes the business cycle dynamics. With conventional monetary policy rules, my non-linear characterization of the solution features interesting potentials for the sunspot equilibria arisin...