After surgical resection of a part of the colon an anastomosis is made to restore the continuity of the colon. Unfortunately, these anastomoses are often complicated by leakage. This thesis embarks on the quest to elucidate the mechanisms behind anastomotic leakage (AL). New techniques are used to study a long-ignored factor in AL: the intestinal microbiota. We demonstrate that the bacterial composition during the construction of the anastomosis plays a role in the subsequent development of anastomotic leakage. The lack of diversity in the microbial composition is associated with AL. Furthermore, the virulence factors (pathogenic molecules) of bacteria and other micro-organisms play an important role in the development of AL and the associa...