Many modern biomedical studies record vast amounts of data on individual subjects. The observed data may often be conceptualized as arising from an underlying smooth stochastic process after discretization and contimation with noise. Data in this form may exhibit multidimensionality and complex structural features. For example, electroencephalography (EEG) records electrical activity in the brain over continuous time. Repeated trials of cognitive tasks in EEG experiments induce longitudinal \textit{and} and functional dimensions, complicating estimation and inference. Regularized estimation and rigorous uncertainty quantification is highly sought after in these settings. In this dissertation I leverage techniques from factor analysis, proba...