IGV representation of chimeric contigs between rRNA and viral sequences mapped on the Xanthi rhabdovirus genome after A) context-based trimming of reads for rRNA contaminants, B) SortMeRNA rRNA reads filtering and C) raw data assembly. Coloured lines are softclips of the contigs that do not align to the viral genome and represent chimeric moieties of the contigs.</p
<p>Each pattern in the shuffled genes represents one of the six different individual parental virus ...
Bar chart representation of the number of rRNA hits on viral sequence GenBank entries per percentile...
Venn diagrams depicting (A) the initial sorting of rRNA reads and non-rRNA reads with numbers referr...
Venn diagrams highlighting the chimeric rRNA/viral reads produced by the NGS process on Xanthi rhabd...
A) Match matrix of ribosomal hits on viral sequences. X-axis contains all the sequences from the ViD...
Dark grey reads indicate chimeric that serve as bridges in the assembly between rRNA and viral seque...
<p>Open circle: non-chimeric contigs; solid circle: chimeric contigs containing one contaminating re...
<p>The similarity plots are generated by aligning the concatenated rhabdovirus proteins and calculat...
<p>(<b>A</b>) Overview of the data generated for each novel rhabdovirus. (<b>B</b>) A schematic show...
<p>BEFV antigenic sites and RABV antigenic sites are indicated by arrows above the sequence. Functio...
Reads from each sampled area (SFP and FTC) assembled in a consensus sequence encompassing the riboso...
<p>(A) Alignment of the leader/<i>gag</i> region, displaying the XMRV specific deletion. (B) Alignme...
<p>The segments having different structures between the two domains and corresponding to Rhabdovirus...
<p>The graphs plot the number of 20–25 nt viral siRNA reads (redundant and non-redundant) at each nu...
<p>(A) Unique (non-redundant) vsiRNAs mapped to either VDV-1 or DWV or KV genomes. Shared reads were...
<p>Each pattern in the shuffled genes represents one of the six different individual parental virus ...
Bar chart representation of the number of rRNA hits on viral sequence GenBank entries per percentile...
Venn diagrams depicting (A) the initial sorting of rRNA reads and non-rRNA reads with numbers referr...
Venn diagrams highlighting the chimeric rRNA/viral reads produced by the NGS process on Xanthi rhabd...
A) Match matrix of ribosomal hits on viral sequences. X-axis contains all the sequences from the ViD...
Dark grey reads indicate chimeric that serve as bridges in the assembly between rRNA and viral seque...
<p>Open circle: non-chimeric contigs; solid circle: chimeric contigs containing one contaminating re...
<p>The similarity plots are generated by aligning the concatenated rhabdovirus proteins and calculat...
<p>(<b>A</b>) Overview of the data generated for each novel rhabdovirus. (<b>B</b>) A schematic show...
<p>BEFV antigenic sites and RABV antigenic sites are indicated by arrows above the sequence. Functio...
Reads from each sampled area (SFP and FTC) assembled in a consensus sequence encompassing the riboso...
<p>(A) Alignment of the leader/<i>gag</i> region, displaying the XMRV specific deletion. (B) Alignme...
<p>The segments having different structures between the two domains and corresponding to Rhabdovirus...
<p>The graphs plot the number of 20–25 nt viral siRNA reads (redundant and non-redundant) at each nu...
<p>(A) Unique (non-redundant) vsiRNAs mapped to either VDV-1 or DWV or KV genomes. Shared reads were...
<p>Each pattern in the shuffled genes represents one of the six different individual parental virus ...
Bar chart representation of the number of rRNA hits on viral sequence GenBank entries per percentile...
Venn diagrams depicting (A) the initial sorting of rRNA reads and non-rRNA reads with numbers referr...