A) Match matrix of ribosomal hits on viral sequences. X-axis contains all the sequences from the ViDB that are chimeric and Y-axis shows the 28S and 18S rRNA sequences from our RiDB. Colours represent the aligners used to identify these chimeric (other combinations than those depicted resulted in null). B) Venn diagram of the chimeric hits identified by the 3 aligners for all host species.</p
<p>The 24 nucleotides that are absolutely invariant, are marked by asterisks above the sequences.</p
<p>A: Venn diagram summarizing the overlap between differentially expressed genes from RNA-Seq (<i>l...
<p>The sequence of the backbone virus VR2385 was shown on top, and only differences were indicated f...
Bar chart representation of the number of rRNA hits on viral sequence GenBank entries per percentile...
IGV representation of chimeric contigs between rRNA and viral sequences mapped on the Xanthi rhabdov...
Venn diagrams highlighting the chimeric rRNA/viral reads produced by the NGS process on Xanthi rhabd...
Venn diagrams depicting (A) the initial sorting of rRNA reads and non-rRNA reads with numbers referr...
<p>(A) Predicted structures within the RRE are shown for SIVmac239 (left) and HIV-1 (middle). Codons...
<p>Open circle: non-chimeric contigs; solid circle: chimeric contigs containing one contaminating re...
Reads from each sampled area (SFP and FTC) assembled in a consensus sequence encompassing the riboso...
<p>Primers analyzed in this study are depicted in bold. Primers #6, #8, and #10 designed on 28S (b) ...
<p>Multiple sequence alignments of GP4 and M amino acid sequences of six parental virus strains and ...
<p>The sequence of the backbone virus VR2385 was shown on top, and only differences were indicated f...
<p>(A) Unique (non-redundant) vsiRNAs mapped to either VDV-1 or DWV or KV genomes. Shared reads were...
Table of the viral titer in the four extreme lines Av3, Av8, Go16 and Sf12 at generation BC2. The fi...
<p>The 24 nucleotides that are absolutely invariant, are marked by asterisks above the sequences.</p
<p>A: Venn diagram summarizing the overlap between differentially expressed genes from RNA-Seq (<i>l...
<p>The sequence of the backbone virus VR2385 was shown on top, and only differences were indicated f...
Bar chart representation of the number of rRNA hits on viral sequence GenBank entries per percentile...
IGV representation of chimeric contigs between rRNA and viral sequences mapped on the Xanthi rhabdov...
Venn diagrams highlighting the chimeric rRNA/viral reads produced by the NGS process on Xanthi rhabd...
Venn diagrams depicting (A) the initial sorting of rRNA reads and non-rRNA reads with numbers referr...
<p>(A) Predicted structures within the RRE are shown for SIVmac239 (left) and HIV-1 (middle). Codons...
<p>Open circle: non-chimeric contigs; solid circle: chimeric contigs containing one contaminating re...
Reads from each sampled area (SFP and FTC) assembled in a consensus sequence encompassing the riboso...
<p>Primers analyzed in this study are depicted in bold. Primers #6, #8, and #10 designed on 28S (b) ...
<p>Multiple sequence alignments of GP4 and M amino acid sequences of six parental virus strains and ...
<p>The sequence of the backbone virus VR2385 was shown on top, and only differences were indicated f...
<p>(A) Unique (non-redundant) vsiRNAs mapped to either VDV-1 or DWV or KV genomes. Shared reads were...
Table of the viral titer in the four extreme lines Av3, Av8, Go16 and Sf12 at generation BC2. The fi...
<p>The 24 nucleotides that are absolutely invariant, are marked by asterisks above the sequences.</p
<p>A: Venn diagram summarizing the overlap between differentially expressed genes from RNA-Seq (<i>l...
<p>The sequence of the backbone virus VR2385 was shown on top, and only differences were indicated f...