In this thesis we look at a performance bottleneck of running molecular dynamics code on GPGPU devices (specifically the CUDA platform), namely random memory access into global graphics card memory. We offer a solution that involves reordering memory blocks in order to enable more memory reads from the local cache (shared memory) instead of the global memory. For determining a memory block order that sufficiently increases performance a space-filling curve was used. Significant performance increases for higher filling fractions were observed with a molecular dynamics simulation that was written from scratch
Abstract—The advent of general purpose graphics processing units (GPGPU’s) brings about a whole new ...
Analytical performance models yield valuable architectural insight without incurring the excessive r...
A molecular-dynamics program typically takes several man-years to write and therefore is representat...
In this thesis we look at a performance bottleneck of running molecular dynamics code on GPGPU devic...
Application performance on graphical processing units (GPUs), in terms of execution speed and memory...
Modern graphics processing units (GPUs) provide impressive computing resources, which can be accesse...
General-purpose computing on GPUs is widely adopted for scientific applications, providing inexpensi...
The most commonly used approach for solving reaction–diffusion systems relies upon stencil computati...
Graphics processing units (GPUs), originally developed for rendering real-time effects in computer g...
Graphical processing units (GPUs) have recently attracted attention for scientific applications such...
none5siCoarse grain (CG) molecular models have been proposed to simulate complex sys- tems with low...
Molecular dynamics (MD) simulation has broad applications, but its irregular memory-access pattern m...
Graphic Processing Units (GPUs), originally developed for rendering real-time effects in computer ga...
We discuss an implementation of molecular dynamics (MD) simulations on a graphic processing unit (GP...
Michela TauferThe advent of general purpose graphics processing units (GPGPU???s) brings about a wh...
Abstract—The advent of general purpose graphics processing units (GPGPU’s) brings about a whole new ...
Analytical performance models yield valuable architectural insight without incurring the excessive r...
A molecular-dynamics program typically takes several man-years to write and therefore is representat...
In this thesis we look at a performance bottleneck of running molecular dynamics code on GPGPU devic...
Application performance on graphical processing units (GPUs), in terms of execution speed and memory...
Modern graphics processing units (GPUs) provide impressive computing resources, which can be accesse...
General-purpose computing on GPUs is widely adopted for scientific applications, providing inexpensi...
The most commonly used approach for solving reaction–diffusion systems relies upon stencil computati...
Graphics processing units (GPUs), originally developed for rendering real-time effects in computer g...
Graphical processing units (GPUs) have recently attracted attention for scientific applications such...
none5siCoarse grain (CG) molecular models have been proposed to simulate complex sys- tems with low...
Molecular dynamics (MD) simulation has broad applications, but its irregular memory-access pattern m...
Graphic Processing Units (GPUs), originally developed for rendering real-time effects in computer ga...
We discuss an implementation of molecular dynamics (MD) simulations on a graphic processing unit (GP...
Michela TauferThe advent of general purpose graphics processing units (GPGPU???s) brings about a wh...
Abstract—The advent of general purpose graphics processing units (GPGPU’s) brings about a whole new ...
Analytical performance models yield valuable architectural insight without incurring the excessive r...
A molecular-dynamics program typically takes several man-years to write and therefore is representat...