Modern analog computers are ideally suited to solving large systems of ordinary differential equations at high speed with low energy consumtion and limited accuracy. In this article, we survey N-body physics, applied to a simple water model inspired by force fields which are popular in molecular dynamics. We demonstrate a setup which simulate a single water molecule in time. To the best of our knowledge such a simulation has never been done on analog computers before. Important implementation aspects of the model, such as scaling, data range and circuit design, are highlighted. We also analyze the performance and compare the solution with a numerical approach.Comment: 9 pages, 9 figures, submitted to Emerging Topics in Computing, IEEE Tra...
Molecular dynamics (MD) solves a system of ordinary differential equations governing the mo-tion of ...
Molecular dynamics (MD) simulation serves as a computational microscope into the behavior of the bio...
Molecular dynamics (MD) is an appropriate method for investigation of peptide-membrane systems and h...
Modern analog computers are ideally suited to solving large systems of ordinary differential equatio...
Molecular simulations of water using classical, molecular mechanic potential energy functions have e...
Molecular simulation is an indispensable tool in many different disciplines such as physics, biology...
All simulations of physical systems employ the use of numerical algorithms and approximations to acc...
Molecular dynamics (MD) is an appropriate method for investigation of biomolecular systems and helps...
For the purpose of molecular dynamics simulations of large biopolymers we have built a parallel comp...
We have performed long molecular dynamics simulations of water using four popular water models, name...
Computer simulation of proteins in aqueous solution at the atomic level of resolution is still limit...
We present the GPU version of DeePMD-kit, which, upon training a deep neural network model using ab ...
Current digital computers are about to hit basic physical boundaries with respect to integration den...
In this talk I discuss the general question of the portability of Molecular Dynamics codes for diffu...
AbstractTwo-dimensional ‘Mercedes Benz’ (MB) or BN2D water model (Naim, 1971) is implemented in Mole...
Molecular dynamics (MD) solves a system of ordinary differential equations governing the mo-tion of ...
Molecular dynamics (MD) simulation serves as a computational microscope into the behavior of the bio...
Molecular dynamics (MD) is an appropriate method for investigation of peptide-membrane systems and h...
Modern analog computers are ideally suited to solving large systems of ordinary differential equatio...
Molecular simulations of water using classical, molecular mechanic potential energy functions have e...
Molecular simulation is an indispensable tool in many different disciplines such as physics, biology...
All simulations of physical systems employ the use of numerical algorithms and approximations to acc...
Molecular dynamics (MD) is an appropriate method for investigation of biomolecular systems and helps...
For the purpose of molecular dynamics simulations of large biopolymers we have built a parallel comp...
We have performed long molecular dynamics simulations of water using four popular water models, name...
Computer simulation of proteins in aqueous solution at the atomic level of resolution is still limit...
We present the GPU version of DeePMD-kit, which, upon training a deep neural network model using ab ...
Current digital computers are about to hit basic physical boundaries with respect to integration den...
In this talk I discuss the general question of the portability of Molecular Dynamics codes for diffu...
AbstractTwo-dimensional ‘Mercedes Benz’ (MB) or BN2D water model (Naim, 1971) is implemented in Mole...
Molecular dynamics (MD) solves a system of ordinary differential equations governing the mo-tion of ...
Molecular dynamics (MD) simulation serves as a computational microscope into the behavior of the bio...
Molecular dynamics (MD) is an appropriate method for investigation of peptide-membrane systems and h...
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