The performance of neighbor list techniques in molecular dynamics simulations depends on a variety of parameters, which may be adjusted for maximum efficiency. Here, a model is presented which allows to choose optimal parameters for the performance of Verlet- and linked-cell lists. In several cases, an efficiency gain of approximate to 50% is found if parameters are chosen adequately. Test cases are presented for Lennard-Jones systems at different state points. Good agreement between analytical model and simulation results is found. (c) 2005 Elsevier B.V All rights reserved
We present simple changes to the cell method for neighbor list construction that enable it to be use...
We present simple changes to the cell method for neighbor list construction that enable it to be use...
ABSTRACT: Molecular mechanics and dynamics simulations use distance based cutoff approximations for ...
The conventional Verlet table neighbor list algorithm is improved to reduce the number of unnecessar...
Searching of the interaction pairs and organization of the interaction processes are important steps...
The conventional Verlet table neighbor list algorithm is improved to reduce the number of unnecessar...
Abstract — The conventional Verlet table neighbor list algo-rithm is improved to reduce the number o...
We present a new algorithm, called linked neighbour list (LNL), useful to substantially speed up off...
Event-driven molecular dynamics is a valuable tool in condensed and soft matter physics when particl...
Event-driven molecular dynamics is a valuable tool in condensed and soft matter physics when particl...
In the pursuit to study the parameterization problem of molecular models with a broad perspective, t...
The Verlet list method is a well-known bookkeeping technique of the interaction list used both in Mo...
The main part of the cpu time in molecular simulations is usually spent calculating the non-bonded i...
Various algorithms for evaluating nonbonded interactions in molecular dynamics (MD) simulations of m...
International audienceFast determination of neighboring atoms is an essential step in molecular dyna...
We present simple changes to the cell method for neighbor list construction that enable it to be use...
We present simple changes to the cell method for neighbor list construction that enable it to be use...
ABSTRACT: Molecular mechanics and dynamics simulations use distance based cutoff approximations for ...
The conventional Verlet table neighbor list algorithm is improved to reduce the number of unnecessar...
Searching of the interaction pairs and organization of the interaction processes are important steps...
The conventional Verlet table neighbor list algorithm is improved to reduce the number of unnecessar...
Abstract — The conventional Verlet table neighbor list algo-rithm is improved to reduce the number o...
We present a new algorithm, called linked neighbour list (LNL), useful to substantially speed up off...
Event-driven molecular dynamics is a valuable tool in condensed and soft matter physics when particl...
Event-driven molecular dynamics is a valuable tool in condensed and soft matter physics when particl...
In the pursuit to study the parameterization problem of molecular models with a broad perspective, t...
The Verlet list method is a well-known bookkeeping technique of the interaction list used both in Mo...
The main part of the cpu time in molecular simulations is usually spent calculating the non-bonded i...
Various algorithms for evaluating nonbonded interactions in molecular dynamics (MD) simulations of m...
International audienceFast determination of neighboring atoms is an essential step in molecular dyna...
We present simple changes to the cell method for neighbor list construction that enable it to be use...
We present simple changes to the cell method for neighbor list construction that enable it to be use...
ABSTRACT: Molecular mechanics and dynamics simulations use distance based cutoff approximations for ...