Add to ORKGThe conventional Verlet table neighbor list algorithm is improved to reduce the number of unnecessary interatomic distance calculation in molecular simulation involving a lot of of atoms. Both of the serial and parallelized performance of molecular dynamics simulation are evaluated using the new algorithm and compared with those using the conventional Verlet table and cell-linked list algorithm. Results show that the new algorithm significantly improved the performance of molecular dynamics simulation in serial programs as well as parallelized programs
Algorithms developed to enable the use of atomistic molecular simulation methods with parallel compu...
Parallel computer programs are used to speed up the calculation of computationally-demanding scienti...
The authors develop an efficient particle labeling procedure based on a linked cell algorithm which ...
The conventional Verlet table neighbor list algorithm is improved to reduce the number of unnecessar...
Abstract — The conventional Verlet table neighbor list algo-rithm is improved to reduce the number o...
Searching of the interaction pairs and organization of the interaction processes are important steps...
The performance of neighbor list techniques in molecular dynamics simulations depends on a variety o...
International audienceFast determination of neighboring atoms is an essential step in molecular dyna...
Various algorithms for evaluating nonbonded interactions in molecular dynamics (MD) simulations of m...
Molecular mechanics and dynamics simulations use distance based cutoff approximations for faster com...
For the purpose of molecular dynamics simulations of large biopolymers we have developed a new metho...
Molecular mechanics and dynamics simulations use distance based cutoff approximations for faster com...
ABSTRACT: Molecular mechanics and dynamics simulations use distance based cutoff approximations for ...
We present a new algorithm, called linked neighbour list (LNL), useful to substantially speed up off...
We present an scalable algorithm for short-range Molecular Dynamics which minimizes interprocessor c...
Algorithms developed to enable the use of atomistic molecular simulation methods with parallel compu...
Parallel computer programs are used to speed up the calculation of computationally-demanding scienti...
The authors develop an efficient particle labeling procedure based on a linked cell algorithm which ...
The conventional Verlet table neighbor list algorithm is improved to reduce the number of unnecessar...
Abstract — The conventional Verlet table neighbor list algo-rithm is improved to reduce the number o...
Searching of the interaction pairs and organization of the interaction processes are important steps...
The performance of neighbor list techniques in molecular dynamics simulations depends on a variety o...
International audienceFast determination of neighboring atoms is an essential step in molecular dyna...
Various algorithms for evaluating nonbonded interactions in molecular dynamics (MD) simulations of m...
Molecular mechanics and dynamics simulations use distance based cutoff approximations for faster com...
For the purpose of molecular dynamics simulations of large biopolymers we have developed a new metho...
Molecular mechanics and dynamics simulations use distance based cutoff approximations for faster com...
ABSTRACT: Molecular mechanics and dynamics simulations use distance based cutoff approximations for ...
We present a new algorithm, called linked neighbour list (LNL), useful to substantially speed up off...
We present an scalable algorithm for short-range Molecular Dynamics which minimizes interprocessor c...
Algorithms developed to enable the use of atomistic molecular simulation methods with parallel compu...
Parallel computer programs are used to speed up the calculation of computationally-demanding scienti...
The authors develop an efficient particle labeling procedure based on a linked cell algorithm which ...