A quantitative understanding of the complex relationship between microscopic structure and the thermodynamics driving peptide and protein folding is a major goal of biophysical chemistry. Here, we present a methodology comprising the use of an extended quasi-Gaussian entropy theory parametrized using molecular dynamics simulation that provides a complete description of the thermodynamics of peptide conformational states. The strategy is applied to analyze the conformational thermodynamics of MR121-GSGSW, a peptide well characterized in experimental studies. The results demonstrate that the extended state of the peptide possesses the lowest partial molar entropy. The origin of this entropy decrease is found to be in the increase of the densi...
Many enhanced sampling methods rely on the identification of appropriate collective variables. For p...
Exploring the protein-folding problem has been a longstanding challenge in molecular biology and bio...
In recent papers we combined molecular dynamics (MD) simulations with the quasi Gaussian entropy (QG...
A quantitative understanding of the complex relationship between microscopic structure and the therm...
The configurational entropy of a β-heptapeptide in solution at four different temperatures is calcul...
The configurational entropy of a beta -heptapeptide in solution at four different temperatures is ca...
A 4-ís molecular dynamics simulation of the second â-hairpin of the B1 domain of streptococcal prote...
Estimation of configurational entropy from molecular dynamics trajectories is a difficult task which...
Protein solubility and conformational stability are a result of a balance of interactions both withi...
AbstractWe show that even in the complete absence of potential energies among the atoms in a protein...
ABSTRACT We show that even in the complete absence of potential energies among the atoms in a protei...
The focus of the PhD has been the investigation of the environmental effects on peptide and protein ...
Molecular dynamics (MD) simulations contain considerable information with regard to the motions and ...
Gramicidin S (GS) analogues belong to an important class of cyclic peptides, characterized by an ant...
Many enhanced sampling methods rely on the identification of appropriate collective variables. For p...
Exploring the protein-folding problem has been a longstanding challenge in molecular biology and bio...
In recent papers we combined molecular dynamics (MD) simulations with the quasi Gaussian entropy (QG...
A quantitative understanding of the complex relationship between microscopic structure and the therm...
The configurational entropy of a β-heptapeptide in solution at four different temperatures is calcul...
The configurational entropy of a beta -heptapeptide in solution at four different temperatures is ca...
A 4-ís molecular dynamics simulation of the second â-hairpin of the B1 domain of streptococcal prote...
Estimation of configurational entropy from molecular dynamics trajectories is a difficult task which...
Protein solubility and conformational stability are a result of a balance of interactions both withi...
AbstractWe show that even in the complete absence of potential energies among the atoms in a protein...
ABSTRACT We show that even in the complete absence of potential energies among the atoms in a protei...
The focus of the PhD has been the investigation of the environmental effects on peptide and protein ...
Molecular dynamics (MD) simulations contain considerable information with regard to the motions and ...
Gramicidin S (GS) analogues belong to an important class of cyclic peptides, characterized by an ant...
Many enhanced sampling methods rely on the identification of appropriate collective variables. For p...
Exploring the protein-folding problem has been a longstanding challenge in molecular biology and bio...
In recent papers we combined molecular dynamics (MD) simulations with the quasi Gaussian entropy (QG...