This study was conducted to understand phytoplankton community in the Lembeh Strait at Bitung and Wori Beach at Manado in October 2015. The phytoplankton samples were collected with vertical towing using Kitahara plankton net (mesh size 80 µm). Identification and enumeration were done using Sedgwick Rafter Counting Chamber (SRCC) under 100-400X magnification. Phytoplankton abundance in Wori, Manado were lower than Lembeh Strait. There were 24 genera of diatom group and nine genera of dinoflagellate group found in Wori and Lembeh Island waters. Total phytoplankton abundance in Wori ranged from 16,293.28 – 464,358.45 cells m-3 (station 6 and station 5, respectively). Whilst, In Lembeh Strait, Bitung, the highest abundance of phytoplankton was...